Gm42578 Pseudogene Detail

Summary

• Symbol
  Gm42578
• Name
  predicted gene 42578

• Feature Type
  pseudogene
• IDs
  MGI:5662715
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:95260095-95260288 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662715	pseudogene	Chr3:95260095-95260288 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012289	pseudogene	Chr3:96079417-96079610 (+)
A/J	MGP_AJ_G0012282	pseudogene	Chr3:93103859-93104052 (+)
AKR/J	MGP_AKRJ_G0012250	pseudogene	Chr3:95255805-95255998 (+)
BALB/cJ	MGP_BALBcJ_G0012267	pseudogene	Chr3:92872155-92872348 (+)
C3H/HeJ	MGP_C3HHeJ_G0012132	pseudogene	Chr3:95528594-95528787 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012579	pseudogene	Chr3:99637060-99637253 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010968	pseudogene	Chr3:89459228-89459420 (+)
CAST/EiJ	MGP_CASTEiJ_G0011905	pseudogene	Chr3:94824635-94824828 (+)
CBA/J	MGP_CBAJ_G0012110	pseudogene	Chr3:103257816-103258009 (+)
DBA/2J	MGP_DBA2J_G0012166	pseudogene	Chr3:92390540-92390733 (+)
FVB/NJ	MGP_FVBNJ_G0012169	pseudogene	Chr3:90464542-90464735 (+)
LP/J	MGP_LPJ_G0012236	pseudogene	Chr3:97385586-97385779 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012173	pseudogene	Chr3:109365201-109365394 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012583	pseudogene	Chr3:94904650-94904843 (+)
PWK/PhJ	MGP_PWKPhJ_G0011750	pseudogene	Chr3:92271353-92271546 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011566	pseudogene	Chr3:93198679-93198872 (+)
WSB/EiJ	MGP_WSBEiJ_G0011936	pseudogene	Chr3:95290225-95290418 (+)

Homology

• Gene Tree
  Gm42578
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42578
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105860 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105860	Ensembl Gene Model | MGI Sequence Detail	194	C57BL/6J
transcript	ENSMUST00000199960	Ensembl | MGI Sequence Detail	194	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426