Gm42581 Pseudogene Detail

Summary

• Symbol
  Gm42581
• Name
  predicted gene 42581

• Feature Type
  pseudogene
• IDs
  MGI:5662718
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:19788052-19789017 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  306 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662718	pseudogene	Chr6:19788052-19789017 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013382	pseudogene	Chr6:17167444-17168405 (+)
A/J	MGP_AJ_G0013365	pseudogene	Chr6:16443104-16444069 (+)
AKR/J	MGP_AKRJ_G0013326	pseudogene	Chr6:16996419-16997384 (+)
BALB/cJ	MGP_BALBcJ_G0013344	pseudogene	Chr6:16531973-16532938 (+)
C3H/HeJ	MGP_C3HHeJ_G0013192	pseudogene	Chr6:16897884-16898849 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013717	pseudogene	Chr6:17679699-17680664 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010010	pseudogene	Chr15:25079039-25080001 (+)
CAST/EiJ	MGP_CASTEiJ_G0010866	pseudogene	Chr15:51881562-51882528 (+)
CBA/J	MGP_CBAJ_G0013162	pseudogene	Chr6:18263199-18264164 (+)
DBA/2J	MGP_DBA2J_G0013245	pseudogene	Chr6:16393006-16393971 (+)
FVB/NJ	MGP_FVBNJ_G0013242	pseudogene	Chr6:16190269-16191234 (+)
LP/J	MGP_LPJ_G0013313	pseudogene	Chr6:17267691-17268652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010372	pseudogene	Chr10:5666755-5667729 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013717	pseudogene	Chr6:16893074-16894039 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013417	pseudogene	Chr7:42139097-42140062 (-)

Homology

• Gene Tree
  Gm42581
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000107067 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107067	Ensembl Gene Model | MGI Sequence Detail	966	C57BL/6J
transcript	ENSMUST00000201774	Ensembl | MGI Sequence Detail	966	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;