Gm42584 Pseudogene Detail

Summary

• Symbol
  Gm42584
• Name
  predicted gene 42584

• Feature Type
  pseudogene
• IDs
  MGI:5662721
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:21491660-21491879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662721	pseudogene	Chr6:21491660-21491879 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013384	pseudogene	Chr6:18939427-18939646 (+)
A/J	MGP_AJ_G0013367	pseudogene	Chr6:18166470-18166689 (+)
AKR/J	MGP_AKRJ_G0013328	pseudogene	Chr6:18719595-18719814 (+)
BALB/cJ	MGP_BALBcJ_G0013346	pseudogene	Chr6:18236997-18237216 (+)
C3H/HeJ	MGP_C3HHeJ_G0013194	pseudogene	Chr6:18678860-18679079 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013719	pseudogene	Chr6:19524140-19524359 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011834	pseudogene	Chr6:16800379-16800885 (+)
CAST/EiJ	MGP_CASTEiJ_G0012908	pseudogene	Chr6:18627462-18627681 (+)
CBA/J	MGP_CBAJ_G0013164	pseudogene	Chr6:20163264-20163483 (+)
DBA/2J	MGP_DBA2J_G0013247	pseudogene	Chr6:18064287-18064506 (+)
FVB/NJ	MGP_FVBNJ_G0013244	pseudogene	Chr6:17869327-17869546 (+)
LP/J	MGP_LPJ_G0013315	pseudogene	Chr6:19043810-19044029 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013262	pseudogene	Chr6:21985105-21985324 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013719	pseudogene	Chr6:18691095-18691314 (+)
PWK/PhJ	MGP_PWKPhJ_G0012721	pseudogene	Chr6:17742584-17743106 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012503	pseudogene	Chr6:18448938-18449460 (+)
WSB/EiJ	MGP_WSBEiJ_G0012949	pseudogene	Chr6:18573694-18573913 (+)

Homology

• Gene Tree
  Gm42584
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107097 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107097	Ensembl Gene Model | MGI Sequence Detail	220	C57BL/6J
transcript	ENSMUST00000201404	Ensembl | MGI Sequence Detail	220	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;