Gm42593 Pseudogene Detail

Summary

• Symbol
  Gm42593
• Name
  predicted gene 42593

• Feature Type
  pseudogene
• IDs
  MGI:5662730
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:121656491-121656867 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662730	pseudogene	Chr3:121656491-121656867 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012387	pseudogene	Chr3:124081334-124081710 (+)
A/J	MGP_AJ_G0012382	pseudogene	Chr3:119947611-119947987 (+)
AKR/J	MGP_AKRJ_G0012347	pseudogene	Chr3:122996017-122996393 (+)
BALB/cJ	MGP_BALBcJ_G0012365	pseudogene	Chr3:119754576-119754952 (+)
C3H/HeJ	MGP_C3HHeJ_G0012227	pseudogene	Chr3:123394148-123394524 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012679	pseudogene	Chr3:128569066-128569442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011047	pseudogene	Chr3:115361935-115362314 (+)
CAST/EiJ	MGP_CASTEiJ_G0011994	pseudogene	Chr3:122766956-122767332 (+)
CBA/J	MGP_CBAJ_G0012206	pseudogene	Chr3:132949489-132949865 (+)
DBA/2J	MGP_DBA2J_G0012263	pseudogene	Chr3:119089633-119089990 (+)
FVB/NJ	MGP_FVBNJ_G0012266	pseudogene	Chr3:116697248-116697624 (+)
LP/J	MGP_LPJ_G0012333	pseudogene	Chr3:125609379-125609755 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012269	pseudogene	Chr3:140534858-140535234 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012682	pseudogene	Chr3:122547926-122548302 (+)
PWK/PhJ	MGP_PWKPhJ_G0011836	pseudogene	Chr3:118789194-118789551 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011652	pseudogene	Chr3:120640969-120641336 (+)
WSB/EiJ	MGP_WSBEiJ_G0012026	pseudogene	Chr3:123271734-123272110 (+)

Homology

• Gene Tree
  Gm42593
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42593
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104595 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104595	Ensembl Gene Model | MGI Sequence Detail	377	C57BL/6J
transcript	ENSMUST00000198469	Ensembl | MGI Sequence Detail	377	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426