Gm42600 Gene Detail

Summary

• Symbol
  Gm42600
• Name
  predicted gene 42600

• Feature Type
  unclassified gene
• IDs
  MGI:5662737
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:85656259-85659846 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662737	unclassified gene	Chr6:85656259-85659846 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001980	unclassified gene	Chr6:86925955-86931134 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0001944	unclassified gene	Chr6:86033653-86037247 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002075	unclassified gene	Chr6:89300188-89309259 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0001924	unclassified gene	Chr6:92795909-92799245 (+)
DBA/2J	MGP_DBA2J_G0001928	unclassified gene	Chr6:82901977-82906526 (+)
FVB/NJ	MGP_FVBNJ_G0001936	unclassified gene	Chr6:82030754-82034787 (+)
LP/J	MGP_LPJ_G0001982	unclassified gene	Chr6:86952548-86957080 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0001861	unclassified gene	Chr6:81855734-81859413 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001823	unclassified gene	Chr6:84631481-84645623 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42600
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000107278 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107278	Ensembl Gene Model | MGI Sequence Detail	3588	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;