Gm42610 Gene Detail

Summary

• Symbol
  Gm42610
• Name
  predicted gene 42610

• Feature Type
  lncRNA gene
• IDs
  MGI:5662747
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:137396748-137404889 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  412 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662747	lncRNA gene	Chr3:137396748-137404889 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006325	lincRNA gene	Chr3:140707547-140715681 (+)
A/J	MGP_AJ_G0006318	lincRNA gene	Chr3:135738214-135746455 (+)
AKR/J	MGP_AKRJ_G0006293	lincRNA gene	Chr3:139341635-139349826 (+)
BALB/cJ	MGP_BALBcJ_G0006292	lincRNA gene	Chr3:135544476-135552637 (+)
C3H/HeJ	MGP_C3HHeJ_G0006243	lincRNA gene	Chr3:139660908-139669137 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006457	lincRNA gene	Chr3:145564553-145572694 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005752	lincRNA gene	Chr3:130836667-130844871 (+)
CAST/EiJ	MGP_CASTEiJ_G0006177	lincRNA gene	Chr3:139418240-139431169 (+)
CBA/J	MGP_CBAJ_G0006226	lincRNA gene	Chr3:150516452-150524617 (+)
DBA/2J	MGP_DBA2J_G0006247	lincRNA gene	Chr3:134859964-134868098 (+)
FVB/NJ	MGP_FVBNJ_G0006269	lincRNA gene	Chr3:132324346-132332553 (+)
LP/J	MGP_LPJ_G0006329	lincRNA gene	Chr3:142119446-142127580 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006259	lincRNA gene	Chr3:158629903-158638153 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006463	lincRNA gene	Chr3:138876432-138884566 (+)
PWK/PhJ	MGP_PWKPhJ_G0006114	lincRNA gene	Chr3:134603489-134611715 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006027	lincRNA gene	Chr3:136970368-136978510 (+)
WSB/EiJ	MGP_WSBEiJ_G0006224	lincRNA gene	Chr3:139692054-139702015 (+)

Homology

• Gene Tree
  Gm42610
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42610
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106122 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106122	Ensembl Gene Model | MGI Sequence Detail	8142	C57BL/6J
transcript	ENSMUST00000196557	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;