Gm42699 Gene Detail

Summary

• Symbol
  Gm42699
• Name
  predicted gene 42699

• Feature Type
  lncRNA gene
• IDs
  MGI:5662836
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104021355-104023011 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662836	lncRNA gene	Chr3:104021355-104023011 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036980	sense intronic lncRNA gene	Chr3:105416324-105417946 (-)
A/J	MGP_AJ_G0036968	sense intronic lncRNA gene	Chr3:102064897-102066780 (-)
AKR/J	MGP_AKRJ_G0036915	sense intronic lncRNA gene	Chr3:104555178-104556688 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0036645	sense intronic lncRNA gene	Chr3:104933716-104935575 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037471	sense intronic lncRNA gene	Chr3:109331090-109332701 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035834	sense intronic lncRNA gene	Chr3:104043806-104045453 (-)
CBA/J	MGP_CBAJ_G0036620	sense intronic lncRNA gene	Chr3:113066777-113070865 (-)
DBA/2J	MGP_DBA2J_G0036795	sense intronic lncRNA gene	Chr3:101310650-101312291 (-)
FVB/NJ	MGP_FVBNJ_G0036745	sense intronic lncRNA gene	Chr3:99239814-99241471 (-)
LP/J	MGP_LPJ_G0036843	sense intronic lncRNA gene	Chr3:106759553-106765610 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036753	sense intronic lncRNA gene	Chr3:119203482-119205697 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037589	sense intronic lncRNA gene	Chr3:104111847-104115515 (-)
PWK/PhJ	MGP_PWKPhJ_G0035526	sense intronic lncRNA gene	Chr3:101090054-101092103 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036034	sense intronic lncRNA gene	Chr3:104680683-104683501 (-)

Homology

• Gene Tree
  Gm42699
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000105083 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105083	Ensembl Gene Model | MGI Sequence Detail	1657	C57BL/6J
transcript	ENSMUST00000198104	Ensembl | MGI Sequence Detail	1657	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;