Gm42700 Gene Detail

Summary

• Symbol
  Gm42700
• Name
  predicted gene 42700

• Feature Type
  lncRNA gene
• IDs
  MGI:5662837
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104002760-104005196 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662837	lncRNA gene	Chr3:104002760-104005196 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036979	sense intronic lncRNA gene	Chr3:105398062-105400499 (-)
A/J	MGP_AJ_G0036967	sense intronic lncRNA gene	Chr3:102046582-102049018 (-)
AKR/J	MGP_AKRJ_G0036914	sense intronic lncRNA gene	Chr3:104537220-104539655 (-)
BALB/cJ	MGP_BALBcJ_G0036958	sense intronic lncRNA gene	Chr3:101819888-101822319 (-)
C3H/HeJ	MGP_C3HHeJ_G0036644	sense intronic lncRNA gene	Chr3:104914650-104917086 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037470	sense intronic lncRNA gene	Chr3:109313030-109315466 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034525	sense intronic lncRNA gene	Chr3:98180008-98182481 (-)
CAST/EiJ	MGP_CASTEiJ_G0035833	sense intronic lncRNA gene	Chr3:104024366-104026837 (-)
CBA/J	MGP_CBAJ_G0036619	sense intronic lncRNA gene	Chr3:113045802-113048238 (-)
DBA/2J	MGP_DBA2J_G0036794	sense intronic lncRNA gene	Chr3:101292295-101294731 (-)
FVB/NJ	MGP_FVBNJ_G0036744	sense intronic lncRNA gene	Chr3:99221063-99223499 (-)
LP/J	MGP_LPJ_G0036842	sense intronic lncRNA gene	Chr3:106741334-106743771 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036752	sense intronic lncRNA gene	Chr3:119181324-119183724 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037588	sense intronic lncRNA gene	Chr3:104092252-104094683 (-)
PWK/PhJ	MGP_PWKPhJ_G0035525	sense intronic lncRNA gene	Chr3:101071459-101073860 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035337	sense intronic lncRNA gene	Chr3:102160710-102163143 (-)
WSB/EiJ	MGP_WSBEiJ_G0036033	sense intronic lncRNA gene	Chr3:104656618-104659050 (-)

Homology

• Gene Tree
  Gm42700
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105148 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105148	Ensembl Gene Model | MGI Sequence Detail	2437	C57BL/6J
transcript	ENSMUST00000199071	Ensembl | MGI Sequence Detail	2437	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;