Gm42702 Gene Detail

Summary

• Symbol
  Gm42702
• Name
  predicted gene 42702

• Feature Type
  lncRNA gene
• IDs
  MGI:5662839
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104043101-104047317 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662839	lncRNA gene	Chr3:104043101-104047317 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036981	sense intronic lncRNA gene	Chr3:105431721-105435947 (-)
A/J	MGP_AJ_G0036969	sense intronic lncRNA gene	Chr3:102080693-102084844 (-)
AKR/J	MGP_AKRJ_G0036916	sense intronic lncRNA gene	Chr3:104575520-104579938 (-)
BALB/cJ	MGP_BALBcJ_G0036959	sense intronic lncRNA gene	Chr3:101855928-101860075 (-)
C3H/HeJ	MGP_C3HHeJ_G0036646	sense intronic lncRNA gene	Chr3:104954581-104958735 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037472	sense intronic lncRNA gene	Chr3:109346613-109352138 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035835	sense intronic lncRNA gene	Chr3:104062676-104066839 (-)
CBA/J	MGP_CBAJ_G0036621	sense intronic lncRNA gene	Chr3:113091008-113095194 (-)
DBA/2J	MGP_DBA2J_G0036796	sense intronic lncRNA gene	Chr3:101328428-101332787 (-)
FVB/NJ	MGP_FVBNJ_G0036746	sense intronic lncRNA gene	Chr3:99260664-99264809 (-)
LP/J	MGP_LPJ_G0036844	sense intronic lncRNA gene	Chr3:106782595-106788314 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036754	sense intronic lncRNA gene	Chr3:119226546-119230778 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037590	sense intronic lncRNA gene	Chr3:104131371-104135539 (-)
PWK/PhJ	MGP_PWKPhJ_G0035527	sense intronic lncRNA gene	Chr3:101109562-101113151 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036035	sense intronic lncRNA gene	Chr3:104700661-104704906 (-)

Homology

• Gene Tree
  Gm42702
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000106443 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106443	Ensembl Gene Model | MGI Sequence Detail	4217	C57BL/6J
transcript	ENSMUST00000199515	Ensembl | MGI Sequence Detail	4217	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;