Gm42706 Gene Detail

Summary

• Symbol
  Gm42706
• Name
  predicted gene 42706

• Feature Type
  lncRNA gene
• IDs
  MGI:5662843
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:143476300-143478209 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662843	lncRNA gene	Chr3:143476300-143478209 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006347	lincRNA gene	Chr3:147031904-147033813 (+)
A/J	MGP_AJ_G0006340	lincRNA gene	Chr3:141831815-141833724 (+)
AKR/J	MGP_AKRJ_G0006315	lincRNA gene	Chr3:145614974-145616883 (+)
BALB/cJ	MGP_BALBcJ_G0006314	lincRNA gene	Chr3:141636887-141638796 (+)
C3H/HeJ	MGP_C3HHeJ_G0006265	lincRNA gene	Chr3:145925847-145927756 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006479	lincRNA gene	Chr3:152119472-152121381 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005774	lincRNA gene	Chr3:137000476-137002403 (+)
CAST/EiJ	MGP_CASTEiJ_G0006199	lincRNA gene	Chr3:145895101-145897013 (+)
CBA/J	MGP_CBAJ_G0006248	lincRNA gene	Chr3:157360706-157362615 (+)
DBA/2J	MGP_DBA2J_G0006269	lincRNA gene	Chr3:141000333-141002242 (+)
FVB/NJ	MGP_FVBNJ_G0006291	lincRNA gene	Chr3:138400368-138402277 (+)
LP/J	MGP_LPJ_G0006351	lincRNA gene	Chr3:148463303-148465212 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006281	lincRNA gene	Chr3:165717263-165719181 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006485	lincRNA gene	Chr3:145222469-145224378 (+)
PWK/PhJ	MGP_PWKPhJ_G0006136	lincRNA gene	Chr3:140805165-140807083 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006049	lincRNA gene	Chr3:143354786-143356691 (+)
WSB/EiJ	MGP_WSBEiJ_G0006245	lincRNA gene	Chr3:146109211-146111119 (+)

Homology

• Gene Tree
  Gm42706
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106524 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106524	Ensembl Gene Model | MGI Sequence Detail	1910	C57BL/6J
transcript	ENSMUST00000199733	Ensembl | MGI Sequence Detail	1910	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;