Gm42715 Gene Detail

Summary

• Symbol
  Gm42715
• Name
  predicted gene 42715

• Feature Type
  protein coding gene
• IDs
  MGI:5662852
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr7:127118756-127166226 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  628 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662852	protein coding gene	Chr7:127118756-127166226 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033042	protein coding gene	Chr7:131873504-131926771 (+)
A/J	MGP_AJ_G0033025	protein coding gene	Chr7:128371201-128419129 (+)
AKR/J	MGP_AKRJ_G0032957	protein coding gene	Chr7:131675228-131724023 (+)
BALB/cJ	MGP_BALBcJ_G0033026	protein coding gene	Chr7:128017696-128065592 (+)
C3H/HeJ	MGP_C3HHeJ_G0032740	protein coding gene	Chr7:131576246-131625656 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033535	protein coding gene	Chr7:137020373-137068753 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030508	protein coding gene	Chr7:129561482-129607036 (+)
CAST/EiJ	MGP_CASTEiJ_G0032069	protein coding gene	Chr7:123371783-123421668 (+)
CBA/J	MGP_CBAJ_G0032713	protein coding gene	Chr7:141647199-141697100 (+)
DBA/2J	MGP_DBA2J_G0032865	protein coding gene	Chr7:126344487-126393162 (+)
FVB/NJ	MGP_FVBNJ_G0032818	protein coding gene	Chr7:126190558-126238530 (+)
LP/J	MGP_LPJ_G0032959	protein coding gene	Chr7:133355951-133405065 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0032850	protein coding gene	Chr7:142760728-142815100 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033555	protein coding gene	Chr7:130663675-130719434 (+)
PWK/PhJ	MGP_PWKPhJ_G0031776	protein coding gene	Chr7:119353492-119402146 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031622	protein coding gene	Chr7:117478457-117527787 (+)
WSB/EiJ	MGP_WSBEiJ_G0032181	protein coding gene	Chr7:131638133-131686293 (+)

Homology

• Gene Tree
  Gm42715
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  2

• Ensembl
  ENSMUSG00000107023 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107023	Ensembl Gene Model | MGI Sequence Detail	47471	C57BL/6J
transcript	ENSMUST00000189629	Ensembl | MGI Sequence Detail	12746	Not Applicable
polypeptide	ENSMUSP00000139644	Ensembl | MGI Sequence Detail	3095	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR017956 AT hook, DNA-binding motif
  IPR001650 Helicase, C-terminal domain-like
  IPR014012 Helicase/SANT-associated domain
  IPR014001 Helicase superfamily 1/2, ATP-binding domain
  IPR050520 INO80/SWR1 chromatin remodeling helicase
  IPR027417 P-loop containing nucleoside triphosphate hydrolase
  IPR038718 SNF2-like, N-terminal domain superfamily
  IPR000330 SNF2, N-terminal
  IPR049730 SNF2/RAD5-like, C-terminal helicase domain

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42715:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69247	Chr7:127118824-127118842 (+)	77 bp
Tssr69248	Chr7:127119257-127119262 (+)	504 bp
Tssr69249	Chr7:127124306-127124310 (+)	5,552 bp
Tssr69250	Chr7:127129389-127129409 (+)	10,643 bp
Tssr69251	Chr7:127140475-127140497 (+)	21,730 bp
Tssr69252	Chr7:127142367-127142397 (+)	23,626 bp
Tssr69254	Chr7:127164649-127164652 (+)	45,895 bp