Gm42738 Gene Detail

Summary

• Symbol
  Gm42738
• Name
  predicted gene 42738

• Feature Type
  lncRNA gene
• IDs
  MGI:5662875
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:127744505-127745868 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662875	lncRNA gene	Chr6:127744505-127745868 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004364	antisense lncRNA gene	Chr6:131304065-131305424 (+)
A/J	MGP_AJ_G0004341	antisense lncRNA gene	Chr6:126291424-126292773 (+)
AKR/J	MGP_AKRJ_G0004323	antisense lncRNA gene	Chr6:129696264-129697609 (+)
BALB/cJ	MGP_BALBcJ_G0004327	antisense lncRNA gene	Chr6:125854416-125855775 (+)
C3H/HeJ	MGP_C3HHeJ_G0004276	antisense lncRNA gene	Chr6:129842501-129843850 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004477	antisense lncRNA gene	Chr6:134733444-134734783 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003938	antisense lncRNA gene	Chr6:123464637-123465980 (+)
CAST/EiJ	MGP_CASTEiJ_G0004237	antisense lncRNA gene	Chr6:130069632-130071360 (+)
CBA/J	MGP_CBAJ_G0004270	antisense lncRNA gene	Chr6:139905491-139906834 (+)
DBA/2J	MGP_DBA2J_G0004285	antisense lncRNA gene	Chr6:125181334-125182701 (+)
FVB/NJ	MGP_FVBNJ_G0004302	antisense lncRNA gene	Chr6:124106663-124108012 (+)
LP/J	MGP_LPJ_G0004364	antisense lncRNA gene	Chr6:131398728-131400085 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004293	antisense lncRNA gene	Chr6:143814128-143815489 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004474	antisense lncRNA gene	Chr6:129679504-129680859 (+)
PWK/PhJ	MGP_PWKPhJ_G0004190	antisense lncRNA gene	Chr6:123462981-123464402 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004132	antisense lncRNA gene	Chr6:127779900-127781257 (+)
WSB/EiJ	MGP_WSBEiJ_G0004275	antisense lncRNA gene	Chr6:130048178-130049531 (+)

Homology

• Gene Tree
  Gm42738
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107219 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107219	Ensembl Gene Model | MGI Sequence Detail	1364	C57BL/6J
transcript	ENSMUST00000201813	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;