Gm42758 Pseudogene Detail

Summary

• Symbol
  Gm42758
• Name
  predicted gene 42758

• Feature Type
  pseudogene
• IDs
  MGI:5662895
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:77466502-77466784 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662895	pseudogene	Chr5:77466502-77466784 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013148	pseudogene	Chr5:77595958-77596240 (+)
A/J	MGP_AJ_G0013131	pseudogene	Chr5:74590783-74591065 (+)
AKR/J	MGP_AKRJ_G0013097	pseudogene	Chr5:77046815-77047097 (+)
BALB/cJ	MGP_BALBcJ_G0013112	pseudogene	Chr5:75331661-75331943 (+)
C3H/HeJ	MGP_C3HHeJ_G0012958	pseudogene	Chr5:77404837-77405119 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013471	pseudogene	Chr5:80668446-80668728 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011649	pseudogene	Chr5:70324500-70324781 (+)
CAST/EiJ	MGP_CASTEiJ_G0012691	pseudogene	Chr5:76625930-76626212 (+)
CBA/J	MGP_CBAJ_G0012930	pseudogene	Chr5:83354847-83355129 (+)
DBA/2J	MGP_DBA2J_G0013009	pseudogene	Chr5:74649701-74649983 (+)
FVB/NJ	MGP_FVBNJ_G0013012	pseudogene	Chr5:73859162-73859444 (+)
LP/J	MGP_LPJ_G0013082	pseudogene	Chr5:77994471-77994753 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013031	pseudogene	Chr5:86450138-86450420 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013474	pseudogene	Chr5:76593654-76593936 (+)
PWK/PhJ	MGP_PWKPhJ_G0012511	pseudogene	Chr5:73672847-73673129 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012310	pseudogene	Chr5:75966193-75966475 (+)
WSB/EiJ	MGP_WSBEiJ_G0012728	pseudogene	Chr5:76916810-76917092 (+)

Homology

• Gene Tree
  Gm42758
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42758
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107238 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107238	Ensembl Gene Model | MGI Sequence Detail	283	C57BL/6J
transcript	ENSMUST00000202146	Ensembl | MGI Sequence Detail	283	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17