Gm42775 Gene Detail

Summary

• Symbol
  Gm42775
• Name
  predicted gene 42775

• Feature Type
  lncRNA gene
• IDs
  MGI:5662912
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:110118020-110123005 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662912	lncRNA gene	Chr9:110118020-110123005 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007510	lincRNA gene	Chr9:112429764-112434712 (-)
A/J	MGP_AJ_G0007505	lincRNA gene	Chr9:108344230-108349214 (-)
AKR/J	MGP_AKRJ_G0007477	lincRNA gene	Chr9:111036279-111041262 (-)
BALB/cJ	MGP_BALBcJ_G0007482	lincRNA gene	Chr9:108086777-108091761 (-)
C3H/HeJ	MGP_C3HHeJ_G0007427	lincRNA gene	Chr9:111537638-111542625 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007654	lincRNA gene	Chr9:115482555-115489003 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006835	lincRNA gene	Chr9:105574125-105579153 (-)
CAST/EiJ	MGP_CASTEiJ_G0007330	lincRNA gene	Chr9:111326617-111333663 (-)
CBA/J	MGP_CBAJ_G0007408	lincRNA gene	Chr9:119778692-119783657 (-)
DBA/2J	MGP_DBA2J_G0007434	lincRNA gene	Chr9:107806004-107810976 (-)
FVB/NJ	MGP_FVBNJ_G0007450	lincRNA gene	Chr9:106630162-106635026 (-)
LP/J	MGP_LPJ_G0007514	lincRNA gene	Chr9:112724501-112729485 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007431	lincRNA gene	Chr9:121139454-121144438 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007659	lincRNA gene	Chr9:111358325-111363302 (-)
PWK/PhJ	MGP_PWKPhJ_G0007271	lincRNA gene	Chr9:108047190-108052318 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007175	lincRNA gene	Chr9:111448728-111456399 (-)
WSB/EiJ	MGP_WSBEiJ_G0007390	lincRNA gene	Chr9:111241986-111246658 (-)

Homology

• Gene Tree
  Gm42775
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105484 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105484	Ensembl Gene Model | MGI Sequence Detail	4986	C57BL/6J
transcript	ENSMUST00000198407	Ensembl | MGI Sequence Detail	740	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;