Gm42777 Gene Detail

Summary

• Symbol
  Gm42777
• Name
  predicted gene 42777

• Feature Type
  unclassified gene
• IDs
  MGI:5662914
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:121548693-121552295 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  270 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662914	unclassified gene	Chr3:121548693-121552295 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001248	unclassified gene	Chr3:123964104-123967880 (-)
A/J	MGP_AJ_G0001230	unclassified gene	Chr3:119838496-119842098 (-)
AKR/J	MGP_AKRJ_G0001215	unclassified gene	Chr3:122879558-122883290 (-)
BALB/cJ	MGP_BALBcJ_G0001224	unclassified gene	Chr3:119642876-119646478 (-)
C3H/HeJ	MGP_C3HHeJ_G0001202	unclassified gene	Chr3:123275490-123279092 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001339	unclassified gene	Chr3:128445835-128449437 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0001184	unclassified gene	Chr3:122649374-122652932 (-)
CBA/J	MGP_CBAJ_G0001193	unclassified gene	Chr3:132807932-132811534 (-)
DBA/2J	MGP_DBA2J_G0001198	unclassified gene	Chr3:118983114-118986715 (-)
FVB/NJ	MGP_FVBNJ_G0001208	unclassified gene	Chr3:116586652-116590300 (-)
LP/J	MGP_LPJ_G0001255	unclassified gene	Chr3:125486841-125490491 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001195	unclassified gene	Chr3:140411824-140416884 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001330	unclassified gene	Chr3:122431106-122434880 (-)
PWK/PhJ	MGP_PWKPhJ_G0001141	unclassified gene	Chr3:118677602-118681322 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001117	unclassified gene	Chr3:120522089-120525618 (-)
WSB/EiJ	MGP_WSBEiJ_G0001201	unclassified gene	Chr3:123157769-123161369 (-)

Homology

• Gene Tree
  Gm42777
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000104676 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104676	Ensembl Gene Model | MGI Sequence Detail	3603	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42777:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35427	Chr3:121552193-121552204 (-)	96 bp