Gm42787 Gene Detail

Summary

• Symbol
  Gm42787
• Name
  predicted gene 42787

• Feature Type
  lncRNA gene
• IDs
  MGI:5662924
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:149065394-149066767 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662924	lncRNA gene	Chr5:149065394-149066767 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006872	lincRNA gene	Chr5:154938581-154939954 (+)
A/J	MGP_AJ_G0006866	lincRNA gene	Chr5:148331897-148333270 (+)
AKR/J	MGP_AKRJ_G0006836	lincRNA gene	Chr5:152908639-152910012 (+)
BALB/cJ	MGP_BALBcJ_G0006842	lincRNA gene	Chr5:149578647-149580020 (+)
C3H/HeJ	MGP_C3HHeJ_G0006787	lincRNA gene	Chr5:153894942-153896315 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007007	lincRNA gene	Chr5:160635519-160636892 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006258	lincRNA gene	Chr5:142694039-142695407 (+)
CAST/EiJ	MGP_CASTEiJ_G0006706	lincRNA gene	Chr5:153505273-153506644 (+)
CBA/J	MGP_CBAJ_G0006769	lincRNA gene	Chr5:167342667-167344040 (+)
DBA/2J	MGP_DBA2J_G0006789	lincRNA gene	Chr5:147988712-147990085 (+)
FVB/NJ	MGP_FVBNJ_G0006812	lincRNA gene	Chr5:147239156-147240529 (+)
LP/J	MGP_LPJ_G0006872	lincRNA gene	Chr5:155634169-155635542 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006794	lincRNA gene	Chr5:169516609-169517982 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007009	lincRNA gene	Chr5:152836499-152837872 (+)
PWK/PhJ	MGP_PWKPhJ_G0006647	lincRNA gene	Chr5:147141476-147142845 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006555	lincRNA gene	Chr5:150138993-150140354 (+)
WSB/EiJ	MGP_WSBEiJ_G0006760	lincRNA gene	Chr5:153650819-153652192 (+)

Homology

• Gene Tree
  Gm42787
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107133 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107133	Ensembl Gene Model | MGI Sequence Detail	1374	C57BL/6J
transcript	ENSMUST00000200879	Ensembl | MGI Sequence Detail	1164	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;