Gm42805 Pseudogene Detail

Summary

• Symbol
  Gm42805
• Name
  predicted gene 42805

• Feature Type
  pseudogene
• IDs
  MGI:5662942
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:140439173-140439646 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662942	pseudogene	Chr5:140439173-140439646 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013297	pseudogene	Chr5:145527654-145528127 (-)
A/J	MGP_AJ_G0013276	pseudogene	Chr5:139335252-139335725 (-)
AKR/J	MGP_AKRJ_G0013241	pseudogene	Chr5:143686682-143687155 (-)
BALB/cJ	MGP_BALBcJ_G0013255	pseudogene	Chr5:140572740-140573213 (-)
C3H/HeJ	MGP_C3HHeJ_G0013105	pseudogene	Chr5:144464403-144464876 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013624	pseudogene	Chr5:150915792-150916265 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011768	pseudogene	Chr5:133177247-133177915 (-)
CAST/EiJ	MGP_CASTEiJ_G0012826	pseudogene	Chr5:143890887-143891361 (-)
CBA/J	MGP_CBAJ_G0013073	pseudogene	Chr5:157116211-157116684 (-)
DBA/2J	MGP_DBA2J_G0013156	pseudogene	Chr5:139144160-139144633 (-)
FVB/NJ	MGP_FVBNJ_G0013155	pseudogene	Chr5:138293674-138294147 (-)
LP/J	MGP_LPJ_G0013224	pseudogene	Chr5:146139088-146139561 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013172	pseudogene	Chr5:159702064-159702537 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013626	pseudogene	Chr5:143522286-143522759 (-)
PWK/PhJ	MGP_PWKPhJ_G0012639	pseudogene	Chr5:138164644-138165117 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012429	pseudogene	Chr5:141226144-141226618 (-)
WSB/EiJ	MGP_WSBEiJ_G0012864	pseudogene	Chr5:144301548-144302021 (-)

Homology

• Gene Tree
  Gm42805
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105056 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105056	Ensembl Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	ENSMUST00000196158	Ensembl | MGI Sequence Detail	276	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;