Gm42813 Gene Detail

Summary

• Symbol
  Gm42813
• Name
  predicted gene 42813

• Feature Type
  lncRNA gene
• IDs
  MGI:5662950
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:85304831-85335435 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662950	lncRNA gene	Chr3:85304831-85335435 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006228	lincRNA gene	Chr3:85385060-85418010 (-)
A/J	MGP_AJ_G0006220	lincRNA gene	Chr3:82520879-82551265 (-)
AKR/J	MGP_AKRJ_G0006196	lincRNA gene	Chr3:84473256-84503564 (-)
BALB/cJ	MGP_BALBcJ_G0006196	lincRNA gene	Chr3:82590836-82622553 (-)
C3H/HeJ	MGP_C3HHeJ_G0006146	lincRNA gene	Chr3:84778447-84809075 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006360	lincRNA gene	Chr3:88560721-88593838 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005665	lincRNA gene	Chr3:78166506-78197362 (-)
CAST/EiJ	MGP_CASTEiJ_G0006080	lincRNA gene	Chr3:84969277-85003503 (-)
CBA/J	MGP_CBAJ_G0006131	lincRNA gene	Chr3:91509603-91545081 (-)
DBA/2J	MGP_DBA2J_G0006150	lincRNA gene	Chr3:82018910-82049858 (-)
FVB/NJ	MGP_FVBNJ_G0006174	lincRNA gene	Chr3:80302102-80340893 (-)
LP/J	MGP_LPJ_G0006233	lincRNA gene	Chr3:86331175-86364994 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006164	lincRNA gene	Chr3:97805028-97838571 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006364	lincRNA gene	Chr3:84265949-84298310 (-)
PWK/PhJ	MGP_PWKPhJ_G0006025	lincRNA gene	Chr3:81811282-81842257 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005932	lincRNA gene	Chr3:83418849-83450364 (-)
WSB/EiJ	MGP_WSBEiJ_G0006127	lincRNA gene	Chr3:84643527-84675433 (-)

Homology

• Gene Tree
  Gm42813
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42813
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105012 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105012	Ensembl Gene Model | MGI Sequence Detail	30605	C57BL/6J
transcript	ENSMUST00000200057	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;