Gm42820 Gene Detail

Summary

• Symbol
  Gm42820
• Name
  predicted gene 42820

• Feature Type
  unclassified gene
• IDs
  MGI:5662957
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98028904-98031966 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662957	unclassified gene	Chr3:98028904-98031966 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001220	unclassified gene	Chr3:99106070-99109132 (+)
A/J	MGP_AJ_G0001202	unclassified gene	Chr3:95926855-95929917 (+)
AKR/J	MGP_AKRJ_G0001187	unclassified gene	Chr3:98223441-98226503 (+)
BALB/cJ	MGP_BALBcJ_G0001196	unclassified gene	Chr3:95730843-95733905 (+)
C3H/HeJ	MGP_C3HHeJ_G0001174	unclassified gene	Chr3:98487562-98490624 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001310	unclassified gene	Chr3:102779541-102782603 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001017	unclassified gene	Chr3:92181599-92184658 (+)
CAST/EiJ	MGP_CASTEiJ_G0001156	unclassified gene	Chr3:97795689-97798742 (+)
CBA/J	MGP_CBAJ_G0001166	unclassified gene	Chr3:106440429-106443491 (+)
DBA/2J	MGP_DBA2J_G0001170	unclassified gene	Chr3:95238562-95241624 (+)
FVB/NJ	MGP_FVBNJ_G0001180	unclassified gene	Chr3:93231068-93234130 (+)
LP/J	MGP_LPJ_G0001228	unclassified gene	Chr3:100370547-100373609 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001169	unclassified gene	Chr3:112511726-112514788 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001302	unclassified gene	Chr3:97848449-97851510 (+)
PWK/PhJ	MGP_PWKPhJ_G0001114	unclassified gene	Chr3:95134192-95137251 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001089	unclassified gene	Chr3:96123543-96126593 (+)
WSB/EiJ	MGP_WSBEiJ_G0001174	unclassified gene	Chr3:98288213-98291274 (+)

Homology

• Gene Tree
  Gm42820
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106427 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106427	Ensembl Gene Model | MGI Sequence Detail	3063	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;