Gm42823 Gene Detail

Summary

• Symbol
  Gm42823
• Name
  predicted gene 42823

• Feature Type
  lncRNA gene
• IDs
  MGI:5662960
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:124214078-124215774 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662960	lncRNA gene	Chr3:124214078-124215774 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003830	antisense lncRNA gene	Chr3:126757796-126759553 (+)
A/J	MGP_AJ_G0003810	antisense lncRNA gene	Chr3:122454891-122456579 (+)
AKR/J	MGP_AKRJ_G0003786	antisense lncRNA gene	Chr3:125633153-125634849 (+)
BALB/cJ	MGP_BALBcJ_G0003797	antisense lncRNA gene	Chr3:122274371-122276059 (+)
C3H/HeJ	MGP_C3HHeJ_G0003744	antisense lncRNA gene	Chr3:125978564-125980252 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003939	antisense lncRNA gene	Chr3:131340252-131341948 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003442	antisense lncRNA gene	Chr3:117827913-117829688 (+)
CAST/EiJ	MGP_CASTEiJ_G0003708	antisense lncRNA gene	Chr3:125427807-125429564 (+)
CBA/J	MGP_CBAJ_G0003738	antisense lncRNA gene	Chr3:135747920-135749608 (+)
DBA/2J	MGP_DBA2J_G0003750	antisense lncRNA gene	Chr3:121648988-121650684 (+)
FVB/NJ	MGP_FVBNJ_G0003771	antisense lncRNA gene	Chr3:119267023-119268719 (+)
LP/J	MGP_LPJ_G0003832	antisense lncRNA gene	Chr3:128305942-128307699 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003758	antisense lncRNA gene	Chr3:143387158-143388854 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003940	antisense lncRNA gene	Chr3:125208894-125210590 (+)
PWK/PhJ	MGP_PWKPhJ_G0003664	antisense lncRNA gene	Chr3:121353401-121355089 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003608	antisense lncRNA gene	Chr3:123277856-123279589 (+)
WSB/EiJ	MGP_WSBEiJ_G0003744	antisense lncRNA gene	Chr3:125930890-125932586 (+)

Homology

• Gene Tree
  Gm42823
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106413 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106413	Ensembl Gene Model | MGI Sequence Detail	1697	C57BL/6J
transcript	ENSMUST00000197975	Ensembl | MGI Sequence Detail	256	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;