Gm42829 Gene Detail

Summary

• Symbol
  Gm42829
• Name
  predicted gene 42829

• Feature Type
  lncRNA gene
• IDs
  MGI:5662966
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:122546553-122549137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662966	lncRNA gene	Chr5:122546553-122549137 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037042	sense intronic lncRNA gene	Chr5:126040140-126042746 (+)
A/J	MGP_AJ_G0037030	sense intronic lncRNA gene	Chr5:120817322-120819908 (+)
AKR/J	MGP_AKRJ_G0036978	sense intronic lncRNA gene	Chr5:124711056-124713624 (+)
BALB/cJ	MGP_BALBcJ_G0037021	sense intronic lncRNA gene	Chr5:122163406-122165980 (+)
C3H/HeJ	MGP_C3HHeJ_G0036708	sense intronic lncRNA gene	Chr5:125327053-125329627 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037534	sense intronic lncRNA gene	Chr5:130883903-130887861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035896	sense intronic lncRNA gene	Chr5:124421423-124423978 (+)
CBA/J	MGP_CBAJ_G0036683	sense intronic lncRNA gene	Chr5:136016685-136019259 (+)
DBA/2J	MGP_DBA2J_G0036858	sense intronic lncRNA gene	Chr5:120875003-120877555 (+)
FVB/NJ	MGP_FVBNJ_G0036808	sense intronic lncRNA gene	Chr5:119867604-119870162 (+)
LP/J	MGP_LPJ_G0036905	sense intronic lncRNA gene	Chr5:126584546-126588646 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036815	sense intronic lncRNA gene	Chr5:139761756-139764396 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037651	sense intronic lncRNA gene	Chr5:124303075-124306750 (+)
PWK/PhJ	MGP_PWKPhJ_G0035588	sense intronic lncRNA gene	Chr5:119647529-119650173 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035397	sense intronic lncRNA gene	Chr5:121999244-122002209 (+)
WSB/EiJ	MGP_WSBEiJ_G0036096	sense intronic lncRNA gene	Chr5:124965989-124972358 (+)

Homology

• Gene Tree
  Gm42829
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105895 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105895	Ensembl Gene Model | MGI Sequence Detail	2585	C57BL/6J
transcript	ENSMUST00000198417	Ensembl | MGI Sequence Detail	2585	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;