Gm42834 Pseudogene Detail

Summary

• Symbol
  Gm42834
• Name
  predicted gene 42834

• Feature Type
  pseudogene
• IDs
  MGI:5662971
  NCBI Gene: 108169024
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:10756876-10757131 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662971	pseudogene	Chr5:10756876-10757131 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012969	pseudogene	Chr5:7827683-7827938 (-)
A/J	MGP_AJ_G0012957	pseudogene	Chr5:7545410-7545665 (-)
AKR/J	MGP_AKRJ_G0012924	pseudogene	Chr5:7785813-7786047 (-)
BALB/cJ	MGP_BALBcJ_G0012936	pseudogene	Chr5:7796464-7796719 (-)
C3H/HeJ	MGP_C3HHeJ_G0012787	pseudogene	Chr5:7972134-7972389 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013295	pseudogene	Chr5:8399976-8400231 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011503	pseudogene	Chr5:7167628-7167883 (-)
CAST/EiJ	MGP_CASTEiJ_G0012524	pseudogene	Chr5:7786567-7786821 (-)
CBA/J	MGP_CBAJ_G0012758	pseudogene	Chr5:8599741-8599996 (-)
DBA/2J	MGP_DBA2J_G0012832	pseudogene	Chr5:7701543-7701798 (-)
FVB/NJ	MGP_FVBNJ_G0012834	pseudogene	Chr5:7438237-7438492 (-)
LP/J	MGP_LPJ_G0012903	pseudogene	Chr5:8001814-8002069 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012848	pseudogene	Chr5:8874427-8874682 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013294	pseudogene	Chr5:7686481-7686736 (-)
PWK/PhJ	MGP_PWKPhJ_G0012341	pseudogene	Chr5:7462367-7462621 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012154	pseudogene	Chr5:7901995-7902249 (-)
WSB/EiJ	MGP_WSBEiJ_G0012558	pseudogene	Chr5:7717086-7717341 (-)

Homology

• Gene Tree
  Gm42834
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105295 (Evidence)
• NCBI Gene
  108169024

Representative Sequences			Length	Strain/Species
genomic	108169024	NCBI Gene Model | MGI Sequence Detail	256	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;