Gm42838 Gene Detail

Summary

• Symbol
  Gm42838
• Name
  predicted gene 42838

• Feature Type
  lncRNA gene
• IDs
  MGI:5662975
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:125134905-125135434 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662975	lncRNA gene	Chr5:125134905-125135434 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004184	antisense lncRNA gene	Chr5:128866180-128866709 (+)
A/J	MGP_AJ_G0004163	antisense lncRNA gene	Chr5:123485067-123485596 (+)
AKR/J	MGP_AKRJ_G0004144	antisense lncRNA gene	Chr5:127472415-127472944 (+)
BALB/cJ	MGP_BALBcJ_G0004149	antisense lncRNA gene	Chr5:124814398-124814927 (+)
C3H/HeJ	MGP_C3HHeJ_G0004097	antisense lncRNA gene	Chr5:128074911-128075440 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004297	antisense lncRNA gene	Chr5:133858396-133858925 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003774	antisense lncRNA gene	Chr5:118020182-118020711 (+)
CAST/EiJ	MGP_CASTEiJ_G0004059	antisense lncRNA gene	Chr5:127214279-127214808 (+)
CBA/J	MGP_CBAJ_G0004091	antisense lncRNA gene	Chr5:139100913-139101442 (+)
DBA/2J	MGP_DBA2J_G0004107	antisense lncRNA gene	Chr5:123502300-123502829 (+)
FVB/NJ	MGP_FVBNJ_G0004123	antisense lncRNA gene	Chr5:122560682-122561211 (+)
LP/J	MGP_LPJ_G0004185	antisense lncRNA gene	Chr5:129385848-129386377 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004113	antisense lncRNA gene	Chr5:142635245-142635774 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004295	antisense lncRNA gene	Chr5:127091004-127091533 (+)
PWK/PhJ	MGP_PWKPhJ_G0004013	antisense lncRNA gene	Chr5:122334271-122334800 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003956	antisense lncRNA gene	Chr5:124726946-124727476 (+)
WSB/EiJ	MGP_WSBEiJ_G0004096	antisense lncRNA gene	Chr5:127786462-127786991 (+)

Homology

• Gene Tree
  Gm42838
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105604 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105604	Ensembl Gene Model | MGI Sequence Detail	530	C57BL/6J
transcript	ENSMUST00000196503	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;