Gm42858 Gene Detail

Summary

• Symbol
  Gm42858
• Name
  predicted gene 42858

• Feature Type
  unclassified gene
• IDs
  MGI:5662995
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:38291738-38293441 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662995	unclassified gene	Chr5:38291738-38293441 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001455	unclassified gene	Chr5:36540021-36541432 (-)
A/J	MGP_AJ_G0001436	unclassified gene	Chr5:35313752-35315158 (-)
AKR/J	MGP_AKRJ_G0001422	unclassified gene	Chr5:36647216-36648623 (-)
BALB/cJ	MGP_BALBcJ_G0001432	unclassified gene	Chr5:35810351-35811758 (-)
C3H/HeJ	MGP_C3HHeJ_G0001409	unclassified gene	Chr5:36640998-36642405 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001550	unclassified gene	Chr5:38480243-38481741 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0001400	unclassified gene	Chr5:39396192-39397599 (-)
DBA/2J	MGP_DBA2J_G0001406	unclassified gene	Chr5:35434746-35436176 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0001399	unclassified gene	Chr5:40104369-40108600 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001536	unclassified gene	Chr5:36137199-36138628 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0001403	unclassified gene	Chr5:36214172-36215580 (-)

Homology

• Gene Tree
  Gm42858
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000107276 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107276	Ensembl Gene Model | MGI Sequence Detail	1704	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;