Gm42875 Gene Detail

Summary

• Symbol
  Gm42875
• Name
  predicted gene 42875

• Feature Type
  lncRNA gene
• IDs
  MGI:5663012
  NCBI Gene: 115490211
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:128847097-128854902 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  359 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663012	lncRNA gene	Chr5:128846588-128854902 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004188	antisense lncRNA gene	Chr5:132797385-132805650 (+)
A/J	MGP_AJ_G0004167	antisense lncRNA gene	Chr5:127224921-127233289 (+)
AKR/J	MGP_AKRJ_G0004148	antisense lncRNA gene	Chr5:131351555-131359869 (+)
BALB/cJ	MGP_BALBcJ_G0004153	antisense lncRNA gene	Chr5:128571551-128579917 (+)
C3H/HeJ	MGP_C3HHeJ_G0004101	antisense lncRNA gene	Chr5:131922511-131930823 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004301	antisense lncRNA gene	Chr5:137888504-137896811 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003778	antisense lncRNA gene	Chr5:121641127-121649532 (+)
CAST/EiJ	MGP_CASTEiJ_G0004063	antisense lncRNA gene	Chr5:131182122-131190293 (+)
CBA/J	MGP_CBAJ_G0004095	antisense lncRNA gene	Chr5:143269266-143277580 (+)
DBA/2J	MGP_DBA2J_G0004111	antisense lncRNA gene	Chr5:127209498-127217809 (+)
FVB/NJ	MGP_FVBNJ_G0004127	antisense lncRNA gene	Chr5:126272597-126280891 (+)
LP/J	MGP_LPJ_G0004189	antisense lncRNA gene	Chr5:133315088-133323353 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004117	antisense lncRNA gene	Chr5:146651130-146664527 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004299	antisense lncRNA gene	Chr5:131016305-131024610 (+)
PWK/PhJ	MGP_PWKPhJ_G0004017	antisense lncRNA gene	Chr5:126105127-126113545 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003960	antisense lncRNA gene	Chr5:128600474-128608774 (+)
WSB/EiJ	MGP_WSBEiJ_G0004099	antisense lncRNA gene	Chr5:131678102-131686398 (+)

Homology

• Gene Tree
  Gm42875
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105271 (Evidence)
• NCBI Gene
  115490211

Representative Sequences			Length	Strain/Species
genomic	115490211	NCBI Gene Model | MGI Sequence Detail	7806	C57BL/6J
transcript	AK079143	GenBank | ENA | DDBJ | MGI Sequence Detail	1018	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;