Gm42880 Gene Detail

Summary

• Symbol
  Gm42880
• Name
  predicted gene 42880

• Feature Type
  lncRNA gene
• IDs
  MGI:5663017
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:132149434-132151309 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663017	lncRNA gene	Chr3:132149434-132151309 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006311	lincRNA gene	Chr3:135202034-135203820 (-)
A/J	MGP_AJ_G0006304	lincRNA gene	Chr3:130434391-130436619 (-)
AKR/J	MGP_AKRJ_G0006280	lincRNA gene	Chr3:133831334-133833181 (-)
BALB/cJ	MGP_BALBcJ_G0006278	lincRNA gene	Chr3:130270579-130272350 (-)
C3H/HeJ	MGP_C3HHeJ_G0006230	lincRNA gene	Chr3:134231457-134234010 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006443	lincRNA gene	Chr3:139959684-139961467 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005738	lincRNA gene	Chr3:125898995-125900847 (-)
CAST/EiJ	MGP_CASTEiJ_G0006163	lincRNA gene	Chr3:133974169-133977893 (-)
CBA/J	MGP_CBAJ_G0006213	lincRNA gene	Chr3:144666644-144668309 (-)
DBA/2J	MGP_DBA2J_G0006235	lincRNA gene	Chr3:129611980-129613859 (-)
FVB/NJ	MGP_FVBNJ_G0006256	lincRNA gene	Chr3:127189536-127191272 (-)
LP/J	MGP_LPJ_G0006316	lincRNA gene	Chr3:136692100-136694107 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0006449	lincRNA gene	Chr3:133505451-133507636 (-)
PWK/PhJ	MGP_PWKPhJ_G0006100	lincRNA gene	Chr3:129368487-129370445 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006014	lincRNA gene	Chr3:131585699-131588982 (-)
WSB/EiJ	MGP_WSBEiJ_G0006210	lincRNA gene	Chr3:134271873-134274135 (-)

Homology

• Gene Tree
  Gm42880
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42880
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000106280 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106280	Ensembl Gene Model | MGI Sequence Detail	1876	C57BL/6J
transcript	ENSMUST00000198028	Ensembl | MGI Sequence Detail	459	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;