Gm42890 Gene Detail

Summary

• Symbol
  Gm42890
• Name
  predicted gene 42890

• Feature Type
  lncRNA gene
• IDs
  MGI:5663027
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:105866819-105891916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  775 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663027	lncRNA gene	Chr3:105866819-105891916 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015516	unclassified non-coding RNA gene	Chr3:107348506-107373599 (+)
A/J	MGP_AJ_G0015493	unclassified non-coding RNA gene	Chr3:103914920-103939960 (+)
AKR/J	MGP_AKRJ_G0015457	unclassified non-coding RNA gene	Chr3:106492512-106517975 (+)
BALB/cJ	MGP_BALBcJ_G0015455	unclassified non-coding RNA gene	Chr3:103696262-103721318 (+)
C3H/HeJ	MGP_C3HHeJ_G0015278	unclassified non-coding RNA gene	Chr3:106836618-106861676 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015909	unclassified non-coding RNA gene	Chr3:111353307-111378410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013644	unclassified non-coding RNA gene	Chr3:99988515-100013843 (+)
CAST/EiJ	MGP_CASTEiJ_G0014832	unclassified non-coding RNA gene	Chr3:105993857-106018925 (+)
CBA/J	MGP_CBAJ_G0015259	unclassified non-coding RNA gene	Chr3:115101002-115128658 (+)
DBA/2J	MGP_DBA2J_G0015353	unclassified non-coding RNA gene	Chr3:103159229-103184289 (+)
FVB/NJ	MGP_FVBNJ_G0015360	unclassified non-coding RNA gene	Chr3:101082487-101107580 (+)
LP/J	MGP_LPJ_G0015432	unclassified non-coding RNA gene	Chr3:108750779-108775852 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015384	unclassified non-coding RNA gene	Chr3:121227579-121252629 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015950	unclassified non-coding RNA gene	Chr3:106066901-106091994 (+)
PWK/PhJ	MGP_PWKPhJ_G0014618	unclassified non-coding RNA gene	Chr3:102940723-102966239 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014406	unclassified non-coding RNA gene	Chr3:104069904-104096614 (+)
WSB/EiJ	MGP_WSBEiJ_G0014938	unclassified non-coding RNA gene	Chr3:106601980-106627122 (+)

Homology

• Gene Tree
  Gm42890
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105852 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105852	Ensembl Gene Model | MGI Sequence Detail	25098	C57BL/6J
transcript	ENSMUST00000167642	Ensembl | MGI Sequence Detail	2566	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42890:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31094	Chr3:105872393-105872421 (+)	5,588 bp