Gm42935 Pseudogene Detail

Summary

• Symbol
  Gm42935
• Name
  predicted gene 42935

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5663072
  NCBI Gene: 108169040
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:37454974-37455124 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663072	pseudogene	Chr5:37454826-37456190 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013058	pseudogene	Chr5:35650099-35650249 (-)
A/J	MGP_AJ_G0013042	pseudogene	Chr5:34489388-34489538 (-)
AKR/J	MGP_AKRJ_G0013009	pseudogene	Chr5:35778516-35778666 (-)
BALB/cJ	MGP_BALBcJ_G0013022	pseudogene	Chr5:34977801-34977951 (-)
C3H/HeJ	MGP_C3HHeJ_G0012873	pseudogene	Chr5:35777135-35777285 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013381	pseudogene	Chr5:37576312-37576462 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011579	pseudogene	Chr5:32199741-32199894 (-)
CAST/EiJ	MGP_CASTEiJ_G0012605	pseudogene	Chr5:34934499-34934650 (-)
CBA/J	MGP_CBAJ_G0012840	pseudogene	Chr5:38498575-38498725 (-)
DBA/2J	MGP_DBA2J_G0012918	pseudogene	Chr5:34606405-34606555 (-)
FVB/NJ	MGP_FVBNJ_G0012924	pseudogene	Chr5:34091008-34091158 (-)
LP/J	MGP_LPJ_G0012991	pseudogene	Chr5:36114049-36114199 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012942	pseudogene	Chr5:39213278-39213428 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013383	pseudogene	Chr5:35275013-35275163 (-)
PWK/PhJ	MGP_PWKPhJ_G0012424	pseudogene	Chr5:33788858-33789009 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012225	pseudogene	Chr5:34733488-34733638 (-)
WSB/EiJ	MGP_WSBEiJ_G0012642	pseudogene	Chr5:35362235-35362385 (-)

Homology

• Gene Tree
  Gm42935
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42935
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000107307 (Evidence)
• NCBI Gene
  108169040

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107307	Ensembl Gene Model | MGI Sequence Detail	151	C57BL/6J
transcript	ENSMUST00000202004	Ensembl | MGI Sequence Detail	151	Not Applicable
polypeptide	XP_036021570	RefSeq | MGI Sequence Detail	43	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17