Gm42936 Gene Detail

Summary

• Symbol
  Gm42936
• Name
  predicted gene 42936

• Feature Type
  lncRNA gene
• IDs
  MGI:5663073
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:36742132-36771083 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  588 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663073	lncRNA gene	Chr5:36742132-36771083 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015595	unclassified non-coding RNA gene	Chr5:34926138-34958326 (-)
A/J	MGP_AJ_G0015571	unclassified non-coding RNA gene	Chr5:33776907-33806939 (-)
AKR/J	MGP_AKRJ_G0015535	unclassified non-coding RNA gene	Chr5:35058902-35095063 (-)
BALB/cJ	MGP_BALBcJ_G0015533	unclassified non-coding RNA gene	Chr5:34290184-34319294 (-)
C3H/HeJ	MGP_C3HHeJ_G0015355	unclassified non-coding RNA gene	Chr5:35070251-35100627 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015987	unclassified non-coding RNA gene	Chr5:36836857-36866282 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013722	unclassified non-coding RNA gene	Chr5:31524623-31553787 (-)
CAST/EiJ	MGP_CASTEiJ_G0014911	unclassified non-coding RNA gene	Chr5:34203745-34233299 (-)
CBA/J	MGP_CBAJ_G0015336	unclassified non-coding RNA gene	Chr5:37721920-37758091 (-)
DBA/2J	MGP_DBA2J_G0015430	unclassified non-coding RNA gene	Chr5:33918414-33947590 (-)
FVB/NJ	MGP_FVBNJ_G0015437	unclassified non-coding RNA gene	Chr5:33396620-33425587 (-)
LP/J	MGP_LPJ_G0015511	unclassified non-coding RNA gene	Chr5:35381019-35415731 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015460	unclassified non-coding RNA gene	Chr5:38477089-38509313 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016029	unclassified non-coding RNA gene	Chr5:34555609-34586857 (-)
PWK/PhJ	MGP_PWKPhJ_G0014696	unclassified non-coding RNA gene	Chr5:33094899-33123869 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014484	unclassified non-coding RNA gene	Chr5:34026297-34054672 (-)
WSB/EiJ	MGP_WSBEiJ_G0015015	unclassified non-coding RNA gene	Chr5:34637958-34668765 (-)

Homology

• Gene Tree
  Gm42936
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106797 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106797	Ensembl Gene Model | MGI Sequence Detail	28952	C57BL/6J
transcript	ENSMUST00000174019	Ensembl | MGI Sequence Detail	652	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42936:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50746	Chr5:36769084-36769090 (-)	1,996 bp