Gm42938 Gene Detail

Summary

• Symbol
  Gm42938
• Name
  predicted gene 42938

• Feature Type
  lncRNA gene
• IDs
  MGI:5663075
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:101318855-101319926 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663075	lncRNA gene	Chr3:101318855-101319926 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036964	sense intronic lncRNA gene	Chr3:102588029-102589100 (+)
A/J	MGP_AJ_G0036952	sense intronic lncRNA gene	Chr3:99339237-99340312 (+)
AKR/J	MGP_AKRJ_G0036899	sense intronic lncRNA gene	Chr3:101790853-101791928 (+)
BALB/cJ	MGP_BALBcJ_G0036943	sense intronic lncRNA gene	Chr3:99091880-99092955 (+)
C3H/HeJ	MGP_C3HHeJ_G0036629	sense intronic lncRNA gene	Chr3:102081298-102082373 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037455	sense intronic lncRNA gene	Chr3:106357061-106358132 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034510	sense intronic lncRNA gene	Chr3:95534437-95535772 (+)
CAST/EiJ	MGP_CASTEiJ_G0035818	sense intronic lncRNA gene	Chr3:101183543-101184614 (+)
CBA/J	MGP_CBAJ_G0036604	sense intronic lncRNA gene	Chr3:110006598-110007673 (+)
DBA/2J	MGP_DBA2J_G0036779	sense intronic lncRNA gene	Chr3:98580105-98581180 (+)
FVB/NJ	MGP_FVBNJ_G0036729	sense intronic lncRNA gene	Chr3:96518721-96519792 (+)
LP/J	MGP_LPJ_G0036827	sense intronic lncRNA gene	Chr3:103938104-103939175 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036737	sense intronic lncRNA gene	Chr3:116201228-116203486 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037573	sense intronic lncRNA gene	Chr3:101276590-101277661 (+)
PWK/PhJ	MGP_PWKPhJ_G0035511	sense intronic lncRNA gene	Chr3:98336770-98337845 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035323	sense intronic lncRNA gene	Chr3:99356903-99357968 (+)
WSB/EiJ	MGP_WSBEiJ_G0036018	sense intronic lncRNA gene	Chr3:101838516-101839591 (+)

Homology

• Gene Tree
  Gm42938
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105611 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105611	Ensembl Gene Model | MGI Sequence Detail	1072	C57BL/6J
transcript	ENSMUST00000198414	Ensembl | MGI Sequence Detail	1072	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;