Gm42939 Gene Detail

Summary

• Symbol
  Gm42939
• Name
  predicted gene 42939

• Feature Type
  lncRNA gene
• IDs
  MGI:5663076
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:101315109-101317313 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663076	lncRNA gene	Chr3:101315109-101317313 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036963	sense intronic lncRNA gene	Chr3:102584299-102586487 (+)
A/J	MGP_AJ_G0036951	sense intronic lncRNA gene	Chr3:99335509-99337697 (+)
AKR/J	MGP_AKRJ_G0036898	sense intronic lncRNA gene	Chr3:101787123-101789321 (+)
BALB/cJ	MGP_BALBcJ_G0036942	sense intronic lncRNA gene	Chr3:99088163-99090351 (+)
C3H/HeJ	MGP_C3HHeJ_G0036628	sense intronic lncRNA gene	Chr3:102077583-102079770 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037454	sense intronic lncRNA gene	Chr3:106353313-106355519 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034509	sense intronic lncRNA gene	Chr3:95530616-95532899 (+)
CAST/EiJ	MGP_CASTEiJ_G0035817	sense intronic lncRNA gene	Chr3:101179756-101182032 (+)
CBA/J	MGP_CBAJ_G0036603	sense intronic lncRNA gene	Chr3:110002873-110005061 (+)
DBA/2J	MGP_DBA2J_G0036778	sense intronic lncRNA gene	Chr3:98576379-98578577 (+)
FVB/NJ	MGP_FVBNJ_G0036728	sense intronic lncRNA gene	Chr3:96514982-96517179 (+)
LP/J	MGP_LPJ_G0036826	sense intronic lncRNA gene	Chr3:103934361-103936562 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036736	sense intronic lncRNA gene	Chr3:116197498-116199675 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037572	sense intronic lncRNA gene	Chr3:101272863-101275048 (+)
PWK/PhJ	MGP_PWKPhJ_G0035510	sense intronic lncRNA gene	Chr3:98332693-98334931 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035322	sense intronic lncRNA gene	Chr3:99351044-99353282 (+)
WSB/EiJ	MGP_WSBEiJ_G0036017	sense intronic lncRNA gene	Chr3:101834765-101836953 (+)

Homology

• Gene Tree
  Gm42939
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104639 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104639	Ensembl Gene Model | MGI Sequence Detail	2205	C57BL/6J
transcript	ENSMUST00000197514	Ensembl | MGI Sequence Detail	2205	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;