Gm42962 Gene Detail

Summary

• Symbol
  Gm42962
• Name
  predicted gene 42962

• Feature Type
  lncRNA gene
• IDs
  MGI:5663099
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:38894032-38961259 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  1720 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663099	lncRNA gene	Chr6:38894032-38961259 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004254	antisense lncRNA gene	Chr6:37263933-37332258 (-)
A/J	MGP_AJ_G0004232	antisense lncRNA gene	Chr6:35634631-35703560 (-)
AKR/J	MGP_AKRJ_G0004213	antisense lncRNA gene	Chr6:36776262-36843265 (-)
BALB/cJ	MGP_BALBcJ_G0004219	antisense lncRNA gene	Chr6:35848449-35916813 (-)
C3H/HeJ	MGP_C3HHeJ_G0004167	antisense lncRNA gene	Chr6:36783740-36850815 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004368	antisense lncRNA gene	Chr6:38182423-38251800 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003841	antisense lncRNA gene	Chr6:33539444-33606810 (-)
CAST/EiJ	MGP_CASTEiJ_G0004129	antisense lncRNA gene	Chr6:36684196-36752986 (-)
CBA/J	MGP_CBAJ_G0004161	antisense lncRNA gene	Chr6:39684841-39752025 (-)
DBA/2J	MGP_DBA2J_G0004177	antisense lncRNA gene	Chr6:35453350-35521958 (-)
FVB/NJ	MGP_FVBNJ_G0004193	antisense lncRNA gene	Chr6:35243875-35311232 (-)
LP/J	MGP_LPJ_G0004255	antisense lncRNA gene	Chr6:37294356-37362890 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004183	antisense lncRNA gene	Chr6:42060833-42128063 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004365	antisense lncRNA gene	Chr6:36708215-36776368 (-)
PWK/PhJ	MGP_PWKPhJ_G0004082	antisense lncRNA gene	Chr6:35128154-35200582 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004026	antisense lncRNA gene	Chr6:36432924-36501297 (-)
WSB/EiJ	MGP_WSBEiJ_G0004165	antisense lncRNA gene	Chr6:36648175-36718084 (-)

Homology

• Gene Tree
  Gm42962
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106737 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106737	Ensembl Gene Model | MGI Sequence Detail	67228	C57BL/6J
transcript	ENSMUST00000201966	Ensembl | MGI Sequence Detail	2325	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;