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Gm42980 Gene Detail
Summary
  • Symbol
    Gm42980
  • Name
    predicted gene 42980
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5663117
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr5:127655814-127657173 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    214 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5663117
 lncRNA gene Chr5:127655814-127657173 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006820
 lincRNA gene Chr5:131532011-131534259 (+)
A/J MGP_AJ_G0006814
 lincRNA gene Chr5:126021996-126023355 (+)
AKR/J MGP_AKRJ_G0006784
 lincRNA gene Chr5:130111066-130112438 (+)
BALB/cJ MGP_BALBcJ_G0006790
 lincRNA gene Chr5:127362831-127364190 (+)
C3H/HeJ MGP_C3HHeJ_G0006735
 lincRNA gene Chr5:130699384-130700756 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006954
 lincRNA gene Chr5:136586163-136590009 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006210
 lincRNA gene Chr5:120473075-120474429 (+)
CAST/EiJ MGP_CASTEiJ_G0006657
 lincRNA gene Chr5:129900542-129901892 (+)
CBA/J MGP_CBAJ_G0006717
 lincRNA gene Chr5:141944492-141947830 (+)
DBA/2J MGP_DBA2J_G0006737
 lincRNA gene Chr5:126020044-126021404 (+)
FVB/NJ MGP_FVBNJ_G0006761
 lincRNA gene Chr5:125069923-125071295 (+)
LP/J MGP_LPJ_G0006821
 lincRNA gene Chr5:132055406-132056766 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006744
 lincRNA gene Chr5:145375194-145376557 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006957
 lincRNA gene Chr5:129771152-129772512 (+)
PWK/PhJ MGP_PWKPhJ_G0006597
 lincRNA gene Chr5:124885802-124887151 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006503
 lincRNA gene Chr5:127322593-127323916 (+)
WSB/EiJ MGP_WSBEiJ_G0006708
 lincRNA gene Chr5:130437768-130439121 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm42980
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106015 Ensembl Gene Model | MGI Sequence Detail 1360 C57BL/6J ±  kb
transcript ENSMUST00000200582 Ensembl | MGI Sequence Detail 1028 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 7
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory