Gm43013 Pseudogene Detail

Summary

• Symbol
  Gm43013
• Name
  predicted gene 43013

• Feature Type
  pseudogene
• IDs
  MGI:5663150
  NCBI Gene: 115490144
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:137307658-137307904 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663150	pseudogene	Chr5:137307170-137308065 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013280	pseudogene	Chr5:142040963-142041209 (+)
A/J	MGP_AJ_G0013260	pseudogene	Chr5:135861280-135861526 (+)
AKR/J	MGP_AKRJ_G0013227	pseudogene	Chr5:140265189-140265435 (+)
BALB/cJ	MGP_BALBcJ_G0013241	pseudogene	Chr5:137231723-137231969 (+)
C3H/HeJ	MGP_C3HHeJ_G0013090	pseudogene	Chr5:140919196-140919442 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013608	pseudogene	Chr5:147305179-147305425 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011756	pseudogene	Chr5:130115201-130115447 (+)
CAST/EiJ	MGP_CASTEiJ_G0012812	pseudogene	Chr5:140319798-140320044 (+)
CBA/J	MGP_CBAJ_G0013058	pseudogene	Chr5:153143832-153144078 (+)
DBA/2J	MGP_DBA2J_G0013141	pseudogene	Chr5:135769703-135769949 (+)
FVB/NJ	MGP_FVBNJ_G0013140	pseudogene	Chr5:134959675-134959921 (+)
LP/J	MGP_LPJ_G0013210	pseudogene	Chr5:142505174-142505420 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013158	pseudogene	Chr5:155989651-155989897 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013610	pseudogene	Chr5:140120428-140120674 (+)
PWK/PhJ	MGP_PWKPhJ_G0012625	pseudogene	Chr5:134848066-134848312 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012414	pseudogene	Chr5:137677351-137677597 (+)
WSB/EiJ	MGP_WSBEiJ_G0012850	pseudogene	Chr5:140849547-140849793 (+)

Homology

• Gene Tree
  Gm43013
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106058 (Evidence)
• NCBI Gene
  115490144

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106058	Ensembl Gene Model | MGI Sequence Detail	247	C57BL/6J
transcript	ENSMUST00000198216	Ensembl | MGI Sequence Detail	247	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;