Gm43061 Gene Detail

Summary

• Symbol
  Gm43061
• Name
  predicted gene 43061

• Feature Type
  lncRNA gene
• IDs
  MGI:5663198
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:103239459-103241699 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663198	lncRNA gene	Chr3:103239459-103241699 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036971	sense intronic lncRNA gene	Chr3:104597807-104606543 (+)
A/J	MGP_AJ_G0036959	sense intronic lncRNA gene	Chr3:101269971-101272212 (+)
AKR/J	MGP_AKRJ_G0036906	sense intronic lncRNA gene	Chr3:103757090-103759330 (+)
BALB/cJ	MGP_BALBcJ_G0036950	sense intronic lncRNA gene	Chr3:101042822-101045090 (+)
C3H/HeJ	MGP_C3HHeJ_G0036636	sense intronic lncRNA gene	Chr3:104103120-104105360 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037462	sense intronic lncRNA gene	Chr3:108482397-108484637 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034517	sense intronic lncRNA gene	Chr3:97412566-97414840 (+)
CAST/EiJ	MGP_CASTEiJ_G0035825	sense intronic lncRNA gene	Chr3:103212975-103215203 (+)
CBA/J	MGP_CBAJ_G0036611	sense intronic lncRNA gene	Chr3:112208647-112210887 (+)
DBA/2J	MGP_DBA2J_G0036786	sense intronic lncRNA gene	Chr3:100520894-100523096 (+)
FVB/NJ	MGP_FVBNJ_G0036736	sense intronic lncRNA gene	Chr3:98451727-98453921 (+)
LP/J	MGP_LPJ_G0036834	sense intronic lncRNA gene	Chr3:105937824-105939973 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036744	sense intronic lncRNA gene	Chr3:118325460-118327499 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037580	sense intronic lncRNA gene	Chr3:103283708-103287241 (+)
PWK/PhJ	MGP_PWKPhJ_G0035517	sense intronic lncRNA gene	Chr3:100276576-100278992 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035329	sense intronic lncRNA gene	Chr3:101373170-101375190 (+)
WSB/EiJ	MGP_WSBEiJ_G0036025	sense intronic lncRNA gene	Chr3:103841496-103843645 (+)

Homology

• Gene Tree
  Gm43061
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104925 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104925	Ensembl Gene Model | MGI Sequence Detail	2241	C57BL/6J
transcript	ENSMUST00000198850	Ensembl | MGI Sequence Detail	2241	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;