Gm43066 Gene Detail

Summary

• Symbol
  Gm43066
• Name
  predicted gene 43066

• Feature Type
  lncRNA gene
• IDs
  MGI:5663203
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:103509259-103510518 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663203	lncRNA gene	Chr3:103509259-103510518 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036972	sense intronic lncRNA gene	Chr3:104888306-104889565 (+)
A/J	MGP_AJ_G0036960	sense intronic lncRNA gene	Chr3:101547903-101549162 (+)
AKR/J	MGP_AKRJ_G0036907	sense intronic lncRNA gene	Chr3:104031105-104032364 (+)
BALB/cJ	MGP_BALBcJ_G0036951	sense intronic lncRNA gene	Chr3:101319060-101320319 (+)
C3H/HeJ	MGP_C3HHeJ_G0036637	sense intronic lncRNA gene	Chr3:104386096-104387355 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037463	sense intronic lncRNA gene	Chr3:108785436-108786695 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034518	sense intronic lncRNA gene	Chr3:97679314-97680769 (+)
CAST/EiJ	MGP_CASTEiJ_G0035826	sense intronic lncRNA gene	Chr3:103506796-103508068 (+)
CBA/J	MGP_CBAJ_G0036612	sense intronic lncRNA gene	Chr3:112516625-112517884 (+)
DBA/2J	MGP_DBA2J_G0036787	sense intronic lncRNA gene	Chr3:100792283-100793542 (+)
FVB/NJ	MGP_FVBNJ_G0036737	sense intronic lncRNA gene	Chr3:98718796-98720055 (+)
LP/J	MGP_LPJ_G0036835	sense intronic lncRNA gene	Chr3:106226258-106227517 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036745	sense intronic lncRNA gene	Chr3:118629616-118630875 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037581	sense intronic lncRNA gene	Chr3:103579428-103580687 (+)
PWK/PhJ	MGP_PWKPhJ_G0035518	sense intronic lncRNA gene	Chr3:100562971-100564257 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035330	sense intronic lncRNA gene	Chr3:101657785-101659059 (+)
WSB/EiJ	MGP_WSBEiJ_G0036026	sense intronic lncRNA gene	Chr3:104130348-104131623 (+)

Homology

• Gene Tree
  Gm43066
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104764 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104764	Ensembl Gene Model | MGI Sequence Detail	1260	C57BL/6J
transcript	ENSMUST00000199589	Ensembl | MGI Sequence Detail	1260	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;