Gm43093 Gene Detail

Summary

• Symbol
  Gm43093
• Name
  predicted gene 43093

• Feature Type
  lncRNA gene
• IDs
  MGI:5663230
  NCBI Gene: 118568742
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:46659471-46660683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663230	lncRNA gene	Chr5:46580200-46660683 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001488	unclassified gene	Chr5:45214460-45216577 (+)
A/J	MGP_AJ_G0001470	unclassified gene	Chr5:43692545-43693727 (+)
AKR/J	MGP_AKRJ_G0001456	unclassified gene	Chr5:45157372-45160029 (+)
BALB/cJ	MGP_BALBcJ_G0001466	unclassified gene	Chr5:44139947-44141133 (+)
C3H/HeJ	MGP_C3HHeJ_G0001443	unclassified gene	Chr5:45201625-45202825 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001583	unclassified gene	Chr5:47319361-47320755 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0001418	unclassified gene	Chr5:44283185-44284390 (+)
CBA/J	MGP_CBAJ_G0001434	unclassified gene	Chr5:48625384-48626584 (+)
DBA/2J	MGP_DBA2J_G0001439	unclassified gene	Chr5:43765488-43766596 (+)
FVB/NJ	MGP_FVBNJ_G0001447	unclassified gene	Chr5:43143253-43144453 (+)
LP/J	MGP_LPJ_G0001493	unclassified gene	Chr5:45711189-45712383 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001433	unclassified gene	Chr5:49429295-49430426 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001571	unclassified gene	Chr5:44671859-44673063 (+)
PWK/PhJ	MGP_PWKPhJ_G0001375	unclassified gene	Chr5:42838612-42839901 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0001436	unclassified gene	Chr5:44770898-44772098 (+)

Homology

• Gene Tree
  Gm43093
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000106875 (Evidence)
• NCBI Gene
  118568742

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106875	Ensembl Gene Model | MGI Sequence Detail	1213	C57BL/6J
transcript	XR_004942629	RefSeq | MGI Sequence Detail	372	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;