Gm43109 Gene Detail

Summary

• Symbol
  Gm43109
• Name
  predicted gene 43109

• Feature Type
  lncRNA gene
• IDs
  MGI:5663246
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:115922100-115934665 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  468 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663246	lncRNA gene	Chr3:115922100-115934665 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003820	antisense lncRNA gene	Chr3:118008463-118023521 (+)
A/J	MGP_AJ_G0003800	antisense lncRNA gene	Chr3:114141813-114154547 (+)
AKR/J	MGP_AKRJ_G0003776	antisense lncRNA gene	Chr3:117024169-117036909 (+)
BALB/cJ	MGP_BALBcJ_G0003787	antisense lncRNA gene	Chr3:113990274-114004710 (+)
C3H/HeJ	MGP_C3HHeJ_G0003734	antisense lncRNA gene	Chr3:117390940-117411494 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003929	antisense lncRNA gene	Chr3:122341062-122359120 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003432	antisense lncRNA gene	Chr3:109836296-109849629 (+)
CAST/EiJ	MGP_CASTEiJ_G0003698	antisense lncRNA gene	Chr3:116667882-116682037 (+)
CBA/J	MGP_CBAJ_G0003728	antisense lncRNA gene	Chr3:126509592-126528169 (+)
DBA/2J	MGP_DBA2J_G0003740	antisense lncRNA gene	Chr3:113384039-113396521 (+)
FVB/NJ	MGP_FVBNJ_G0003761	antisense lncRNA gene	Chr3:111023487-111036599 (+)
LP/J	MGP_LPJ_G0003822	antisense lncRNA gene	Chr3:119551902-119565523 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003748	antisense lncRNA gene	Chr3:133881866-133897353 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003930	antisense lncRNA gene	Chr3:116579325-116591787 (+)
PWK/PhJ	MGP_PWKPhJ_G0003654	antisense lncRNA gene	Chr3:113020863-113033498 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003598	antisense lncRNA gene	Chr3:114581669-114594128 (+)
WSB/EiJ	MGP_WSBEiJ_G0003734	antisense lncRNA gene	Chr3:117253599-117272640 (+)

Homology

• Gene Tree
  Gm43109
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104653 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104653	Ensembl Gene Model | MGI Sequence Detail	12566	C57BL/6J
transcript	ENSMUST00000198269	Ensembl | MGI Sequence Detail	753	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;