Gm43111 Gene Detail

Summary

• Symbol
  Gm43111
• Name
  predicted gene 43111

• Feature Type
  lncRNA gene
• IDs
  MGI:5663248
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:4918348-4920266 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663248	lncRNA gene	Chr5:4918348-4920266 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037023	sense intronic lncRNA gene	Chr5:1751962-1753880 (-)
A/J	MGP_AJ_G0037011	sense intronic lncRNA gene	Chr5:1664953-1666871 (-)
AKR/J	MGP_AKRJ_G0036959	sense intronic lncRNA gene	Chr5:1679458-1681376 (-)
BALB/cJ	MGP_BALBcJ_G0037002	sense intronic lncRNA gene	Chr5:1859809-1861727 (-)
C3H/HeJ	MGP_C3HHeJ_G0036689	sense intronic lncRNA gene	Chr5:1863430-1865348 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037515	sense intronic lncRNA gene	Chr5:2107737-2109655 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034566	sense intronic lncRNA gene	Chr5:1781396-1783306 (-)
CAST/EiJ	MGP_CASTEiJ_G0035877	sense intronic lncRNA gene	Chr5:1832784-1834705 (-)
CBA/J	MGP_CBAJ_G0036664	sense intronic lncRNA gene	Chr5:2050771-2052689 (-)
DBA/2J	MGP_DBA2J_G0036839	sense intronic lncRNA gene	Chr5:1806543-1808461 (-)
FVB/NJ	MGP_FVBNJ_G0036789	sense intronic lncRNA gene	Chr5:1673972-1675890 (-)
LP/J	MGP_LPJ_G0036886	sense intronic lncRNA gene	Chr5:1843462-1845380 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036796	sense intronic lncRNA gene	Chr5:1931074-1933023 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037632	sense intronic lncRNA gene	Chr5:1762796-1764714 (-)
PWK/PhJ	MGP_PWKPhJ_G0035569	sense intronic lncRNA gene	Chr5:1726251-1728186 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035378	sense intronic lncRNA gene	Chr5:2024730-2026641 (-)
WSB/EiJ	MGP_WSBEiJ_G0036077	sense intronic lncRNA gene	Chr5:1773583-1775501 (-)

Homology

• Gene Tree
  Gm43111
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106472 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106472	Ensembl Gene Model | MGI Sequence Detail	1919	C57BL/6J
transcript	ENSMUST00000197445	Ensembl | MGI Sequence Detail	1919	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;