Gm43115 Pseudogene Detail

Summary

• Symbol
  Gm43115
• Name
  predicted gene 43115

• Feature Type
  pseudogene
• IDs
  MGI:5663252
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:145905220-145905379 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663252	pseudogene	Chr5:145905220-145905379 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013315	pseudogene	Chr5:151438678-151438837 (+)
A/J	MGP_AJ_G0013297	pseudogene	Chr5:144988785-144988944 (+)
AKR/J	MGP_AKRJ_G0013259	pseudogene	Chr5:149474033-149474192 (+)
BALB/cJ	MGP_BALBcJ_G0013275	pseudogene	Chr5:146211801-146211960 (+)
C3H/HeJ	MGP_C3HHeJ_G0013122	pseudogene	Chr5:150356846-150357005 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013643	pseudogene	Chr5:157003031-157003190 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012842	pseudogene	Chr5:150064358-150064517 (-)
CBA/J	MGP_CBAJ_G0013091	pseudogene	Chr5:163492178-163492337 (+)
DBA/2J	MGP_DBA2J_G0013175	pseudogene	Chr5:144697842-144698001 (+)
FVB/NJ	MGP_FVBNJ_G0013173	pseudogene	Chr5:143938919-143939078 (+)
LP/J	MGP_LPJ_G0013245	pseudogene	Chr5:152120385-152120544 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013192	pseudogene	Chr5:165793593-165793752 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013648	pseudogene	Chr5:149377036-149377195 (+)
PWK/PhJ	MGP_PWKPhJ_G0012658	pseudogene	Chr5:143885524-143885683 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012445	pseudogene	Chr5:146797562-146797720 (+)
WSB/EiJ	MGP_WSBEiJ_G0012883	pseudogene	Chr5:150178289-150178448 (+)

Homology

• Gene Tree
  Gm43115
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm43115
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105394 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105394	Ensembl Gene Model | MGI Sequence Detail	160	C57BL/6J
transcript	ENSMUST00000196244	Ensembl | MGI Sequence Detail	160	Not Applicable

References

• Summaries
  All 12

  Phenotypes 10
• Earliest
  J:263525 Scheer N, et al., In vivo responses of the human and murine pregnane X receptor to dexamethasone in mice. Drug Metab Dispos. 2010 Jul;38(7):1046-53
• Latest
  J:345093 Heintz MM, et al., Human CYP2B6 produces oxylipins from polyunsaturated fatty acids and reduces diet-induced obesity. PLoS One. 2022;17(12):e0277053