Gm43117 Pseudogene Detail

Summary

• Symbol
  Gm43117
• Name
  predicted gene 43117

• Feature Type
  pseudogene
• IDs
  MGI:5663254
  NCBI Gene: 108169106
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:29924326-29924704 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663254	pseudogene	Chr5:29924252-29924784 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013032	pseudogene	Chr5:27663200-27663578 (-)
A/J	MGP_AJ_G0013019	pseudogene	Chr5:26740235-26740613 (-)
AKR/J	MGP_AKRJ_G0012984	pseudogene	Chr5:27822318-27822696 (-)
BALB/cJ	MGP_BALBcJ_G0012998	pseudogene	Chr5:27270926-27271304 (-)
C3H/HeJ	MGP_C3HHeJ_G0012850	pseudogene	Chr5:27845584-27845962 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013356	pseudogene	Chr5:29330499-29330877 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012582	pseudogene	Chr5:26951804-26952182 (-)
CBA/J	MGP_CBAJ_G0012817	pseudogene	Chr5:29866374-29866752 (-)
DBA/2J	MGP_DBA2J_G0012895	pseudogene	Chr5:26937229-26937607 (-)
FVB/NJ	MGP_FVBNJ_G0012900	pseudogene	Chr5:26348216-26348594 (-)
LP/J	MGP_LPJ_G0012966	pseudogene	Chr5:28102672-28103050 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012915	pseudogene	Chr5:30858780-30859158 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013359	pseudogene	Chr5:27402021-27402399 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012203	pseudogene	Chr5:26701425-26703008 (-)
WSB/EiJ	MGP_WSBEiJ_G0012619	pseudogene	Chr5:27444992-27445370 (-)

Homology

• Gene Tree
  Gm43117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm43117
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105032 (Evidence)
• NCBI Gene
  108169106

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105032	Ensembl Gene Model | MGI Sequence Detail	379	C57BL/6J
transcript	ENSMUST00000198531	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17