Gm43118 Gene Detail

Summary

• Symbol
  Gm43118
• Name
  predicted gene 43118

• Feature Type
  lncRNA gene
• IDs
  MGI:5663255
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:111535381-111536155 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663255	lncRNA gene	Chr5:111535381-111536155 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004141	antisense lncRNA gene	Chr5:113883808-113884582 (-)
A/J	MGP_AJ_G0004120	antisense lncRNA gene	Chr5:109474388-109475147 (-)
AKR/J	MGP_AKRJ_G0004101	antisense lncRNA gene	Chr5:112950225-112950999 (-)
BALB/cJ	MGP_BALBcJ_G0004107	antisense lncRNA gene	Chr5:110843905-110844664 (-)
C3H/HeJ	MGP_C3HHeJ_G0004055	antisense lncRNA gene	Chr5:113371156-113371930 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004255	antisense lncRNA gene	Chr5:118359588-118360362 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003732	antisense lncRNA gene	Chr5:104317088-104317846 (-)
CAST/EiJ	MGP_CASTEiJ_G0004017	antisense lncRNA gene	Chr5:112263388-112264175 (-)
CBA/J	MGP_CBAJ_G0004049	antisense lncRNA gene	Chr5:122779063-122779837 (-)
DBA/2J	MGP_DBA2J_G0004064	antisense lncRNA gene	Chr5:109551941-109552715 (-)
FVB/NJ	MGP_FVBNJ_G0004081	antisense lncRNA gene	Chr5:108240181-108240940 (-)
LP/J	MGP_LPJ_G0004142	antisense lncRNA gene	Chr5:114462035-114462809 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004070	antisense lncRNA gene	Chr5:127410265-127411024 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004252	antisense lncRNA gene	Chr5:112382715-112383489 (-)
PWK/PhJ	MGP_PWKPhJ_G0003970	antisense lncRNA gene	Chr5:108135793-108136568 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003914	antisense lncRNA gene	Chr5:109855728-109856479 (-)
WSB/EiJ	MGP_WSBEiJ_G0004053	antisense lncRNA gene	Chr5:112874936-112875710 (-)

Homology

• Gene Tree
  Gm43118
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104559 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104559	Ensembl Gene Model | MGI Sequence Detail	775	C57BL/6J
transcript	ENSMUST00000199149	Ensembl | MGI Sequence Detail	775	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;