Gm43126 Gene Detail

Summary

• Symbol
  Gm43126
• Name
  predicted gene 43126

• Feature Type
  lncRNA gene
• IDs
  MGI:5663263
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:127099929-127103118 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663263	lncRNA gene	Chr6:127099929-127103118 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004362	antisense lncRNA gene	Chr6:130605020-130607779 (+)
A/J	MGP_AJ_G0004339	antisense lncRNA gene	Chr6:125645640-125648453 (+)
AKR/J	MGP_AKRJ_G0004321	antisense lncRNA gene	Chr6:129043559-129046327 (+)
BALB/cJ	MGP_BALBcJ_G0004325	antisense lncRNA gene	Chr6:125201488-125204281 (+)
C3H/HeJ	MGP_C3HHeJ_G0004274	antisense lncRNA gene	Chr6:129162912-129166802 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004475	antisense lncRNA gene	Chr6:134011927-134016038 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003936	antisense lncRNA gene	Chr6:122817762-122820921 (+)
CAST/EiJ	MGP_CASTEiJ_G0004235	antisense lncRNA gene	Chr6:129362222-129367569 (+)
CBA/J	MGP_CBAJ_G0004268	antisense lncRNA gene	Chr6:139168096-139170856 (+)
DBA/2J	MGP_DBA2J_G0004283	antisense lncRNA gene	Chr6:124532329-124534917 (+)
FVB/NJ	MGP_FVBNJ_G0004300	antisense lncRNA gene	Chr6:123458407-123461069 (+)
LP/J	MGP_LPJ_G0004362	antisense lncRNA gene	Chr6:130718008-130722530 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004291	antisense lncRNA gene	Chr6:143117817-143120982 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004472	antisense lncRNA gene	Chr6:128994674-128998790 (+)
PWK/PhJ	MGP_PWKPhJ_G0004188	antisense lncRNA gene	Chr6:122802775-122805979 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004130	antisense lncRNA gene	Chr6:127075867-127078994 (+)
WSB/EiJ	MGP_WSBEiJ_G0004273	antisense lncRNA gene	Chr6:129358685-129361132 (+)

Homology

• Gene Tree
  Gm43126
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107379 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107379	Ensembl Gene Model | MGI Sequence Detail	3190	C57BL/6J
transcript	ENSMUST00000201546	Ensembl | MGI Sequence Detail	429	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;