Gm43129 Gene Detail

Summary

• Symbol
  Gm43129
• Name
  predicted gene 43129

• Feature Type
  lncRNA gene
• IDs
  MGI:5663266
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:151609276-151617391 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663266	lncRNA gene	Chr5:151609276-151617391 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006890	lincRNA gene	Chr5:157653874-157661236 (+)
A/J	MGP_AJ_G0006884	lincRNA gene	Chr5:150908643-150916885 (+)
AKR/J	MGP_AKRJ_G0006854	lincRNA gene	Chr5:155551421-155559475 (+)
BALB/cJ	MGP_BALBcJ_G0006860	lincRNA gene	Chr5:152158743-152169977 (+)
C3H/HeJ	MGP_C3HHeJ_G0006805	lincRNA gene	Chr5:156603962-156612796 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007025	lincRNA gene	Chr5:163373142-163382263 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006724	lincRNA gene	Chr5:156233954-156241148 (+)
CBA/J	MGP_CBAJ_G0006787	lincRNA gene	Chr5:170253898-170266870 (+)
DBA/2J	MGP_DBA2J_G0006807	lincRNA gene	Chr5:150537829-150545867 (+)
FVB/NJ	MGP_FVBNJ_G0006830	lincRNA gene	Chr5:149783399-149791825 (+)
LP/J	MGP_LPJ_G0006890	lincRNA gene	Chr5:158278545-158286625 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006812	lincRNA gene	Chr5:172319790-172331469 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007027	lincRNA gene	Chr5:155529440-155538078 (+)
PWK/PhJ	MGP_PWKPhJ_G0006665	lincRNA gene	Chr5:149679662-149687911 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006573	lincRNA gene	Chr5:152765855-152773390 (+)
WSB/EiJ	MGP_WSBEiJ_G0006778	lincRNA gene	Chr5:156334830-156342010 (+)

Homology

• Gene Tree
  Gm43129
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107241 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107241	Ensembl Gene Model | MGI Sequence Detail	8116	C57BL/6J
transcript	ENSMUST00000201237	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;