Gm43140 Gene Detail

Summary

• Symbol
  Gm43140
• Name
  predicted gene 43140

• Feature Type
  lncRNA gene
• IDs
  MGI:5663277
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:33871405-33872095 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663277	lncRNA gene	Chr3:33871405-33872095 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003732	antisense lncRNA gene	Chr3:31442828-31443518 (+)
A/J	MGP_AJ_G0003713	antisense lncRNA gene	Chr3:30980900-30981590 (+)
AKR/J	MGP_AKRJ_G0003690	antisense lncRNA gene	Chr3:31504019-31504709 (+)
BALB/cJ	MGP_BALBcJ_G0003702	antisense lncRNA gene	Chr3:30623683-30624373 (+)
C3H/HeJ	MGP_C3HHeJ_G0003649	antisense lncRNA gene	Chr3:31541661-31542351 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003842	antisense lncRNA gene	Chr3:33028555-33029245 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003347	antisense lncRNA gene	Chr3:28756375-28757075 (+)
CAST/EiJ	MGP_CASTEiJ_G0003612	antisense lncRNA gene	Chr3:31371339-31372029 (+)
CBA/J	MGP_CBAJ_G0003645	antisense lncRNA gene	Chr3:33895507-33896197 (+)
DBA/2J	MGP_DBA2J_G0003654	antisense lncRNA gene	Chr3:30452504-30453194 (+)
FVB/NJ	MGP_FVBNJ_G0003675	antisense lncRNA gene	Chr3:29896268-29896958 (+)
LP/J	MGP_LPJ_G0003733	antisense lncRNA gene	Chr3:32235282-32235972 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003663	antisense lncRNA gene	Chr3:36402152-36402842 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003843	antisense lncRNA gene	Chr3:31278868-31279558 (+)
PWK/PhJ	MGP_PWKPhJ_G0003568	antisense lncRNA gene	Chr3:29999988-30000678 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003511	antisense lncRNA gene	Chr3:30693687-30694383 (+)
WSB/EiJ	MGP_WSBEiJ_G0003648	antisense lncRNA gene	Chr3:31305121-31305811 (+)

Homology

• Gene Tree
  Gm43140
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105286 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105286	Ensembl Gene Model | MGI Sequence Detail	691	C57BL/6J
transcript	ENSMUST00000197317	Ensembl | MGI Sequence Detail	456	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;