Gm43171 Pseudogene Detail

Summary

• Symbol
  Gm43171
• Name
  predicted gene 43171

• Feature Type
  pseudogene
• IDs
  MGI:5663308
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68123386-68123676 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663308	pseudogene	Chr6:68123386-68123676 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013516	pseudogene	Chr6:65529129-65529419 (-)
AKR/J	MGP_AKRJ_G0013482	pseudogene	Chr6:67538323-67538613 (-)
BALB/cJ	MGP_BALBcJ_G0013494	pseudogene	Chr6:65729382-65729672 (-)
C3H/HeJ	MGP_C3HHeJ_G0013443	pseudogene	Chr6:116800763-116801053 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013880	pseudogene	Chr6:69958737-69959136 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011937	pseudogene	Chr6:64835895-64836209 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013313	pseudogene	Chr6:72917276-72917566 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013396	pseudogene	Chr6:64628196-64628486 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013413	pseudogene	Chr6:76573248-76573537 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013872	pseudogene	Chr6:67537139-67537428 (-)
PWK/PhJ	MGP_PWKPhJ_G0012847	pseudogene	Chr6:64020522-64020812 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012632	pseudogene	Chr6:66995852-66996142 (-)
WSB/EiJ	MGP_WSBEiJ_G0013093	pseudogene	Chr6:67869247-67869537 (-)

Homology

• Gene Tree
  Gm43171
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000105306 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105306	Ensembl Gene Model | MGI Sequence Detail	291	C57BL/6J
transcript	ENSMUST00000199882	Ensembl | MGI Sequence Detail	291	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;