Gm43220 Pseudogene Detail

Summary

• Symbol
  Gm43220
• Name
  predicted gene 43220

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5663357
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:69904605-69904886 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663357	pseudogenic gene segment	Chr6:69904605-69904886 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000283	pseudogenic gene segment	Chr6:70276536-70276817 (-)
A/J	MGP_AJ_G0000255	pseudogenic gene segment	Chr6:67484863-67485144 (-)
AKR/J	MGP_AKRJ_G0000256	pseudogenic gene segment	Chr6:69447282-69447563 (-)
BALB/cJ	MGP_BALBcJ_G0000251	pseudogenic gene segment	Chr6:67635082-67635363 (-)
C3H/HeJ	MGP_C3HHeJ_G0000216	pseudogenic gene segment	Chr6:114776368-114776649 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000374	pseudogenic gene segment	Chr6:72043236-72043517 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000243	pseudogenic gene segment	Chr6:69399274-69399555 (-)
CBA/J	MGP_CBAJ_G0000241	pseudogenic gene segment	Chr6:74908392-74908673 (-)
DBA/2J	MGP_DBA2J_G0000239	pseudogenic gene segment	Chr6:66929515-66929796 (-)
FVB/NJ	MGP_FVBNJ_G0000245	pseudogenic gene segment	Chr6:66360831-66361112 (-)
LP/J	MGP_LPJ_G0000293	pseudogenic gene segment	Chr6:70130290-70130571 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000254	pseudogenic gene segment	Chr6:78585272-78585553 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000350	pseudogenic gene segment	Chr6:69383115-69383396 (-)
PWK/PhJ	MGP_PWKPhJ_G0000208	pseudogenic gene segment	Chr6:65982153-65982434 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000186	pseudogenic gene segment	Chr6:68247862-68248143 (-)
WSB/EiJ	MGP_WSBEiJ_G0000243	pseudogenic gene segment	Chr6:69670206-69670487 (-)

Homology

• Gene Tree
  Gm43220
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105451 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105451	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000199299	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;