Gm43221 Gene Detail

Summary

• Symbol
  Gm43221
• Name
  predicted gene 43221

• Feature Type
  lncRNA gene
• IDs
  MGI:5663358
  NCBI Gene: 115489699
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:108907340-108909410 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663358	lncRNA gene	Chr3:108907340-108913671 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003818	antisense lncRNA gene	Chr3:110592537-110594607 (+)
A/J	MGP_AJ_G0003798	antisense lncRNA gene	Chr3:107079767-107081837 (+)
AKR/J	MGP_AKRJ_G0003774	antisense lncRNA gene	Chr3:109689144-109691214 (+)
BALB/cJ	MGP_BALBcJ_G0003785	antisense lncRNA gene	Chr3:106775814-106777890 (+)
C3H/HeJ	MGP_C3HHeJ_G0003732	antisense lncRNA gene	Chr3:110037740-110039810 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003927	antisense lncRNA gene	Chr3:114695234-114697304 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003430	antisense lncRNA gene	Chr3:103197538-103199620 (+)
CAST/EiJ	MGP_CASTEiJ_G0003696	antisense lncRNA gene	Chr3:109438353-109440423 (+)
CBA/J	MGP_CBAJ_G0003726	antisense lncRNA gene	Chr3:118638212-118640282 (+)
DBA/2J	MGP_DBA2J_G0003738	antisense lncRNA gene	Chr3:106255505-106257575 (+)
FVB/NJ	MGP_FVBNJ_G0003759	antisense lncRNA gene	Chr3:104132740-104134810 (+)
LP/J	MGP_LPJ_G0003820	antisense lncRNA gene	Chr3:112018285-112020355 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003746	antisense lncRNA gene	Chr3:124668923-124670993 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003928	antisense lncRNA gene	Chr3:109300004-109302074 (+)
PWK/PhJ	MGP_PWKPhJ_G0003652	antisense lncRNA gene	Chr3:106002538-106004612 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003596	antisense lncRNA gene	Chr3:107452264-107454340 (+)
WSB/EiJ	MGP_WSBEiJ_G0003732	antisense lncRNA gene	Chr3:109825057-109827133 (+)

Homology

• Gene Tree
  Gm43221
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000106108 (Evidence)
• NCBI Gene
  115489699

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106108	Ensembl Gene Model | MGI Sequence Detail	2071	C57BL/6J
transcript	ENSMUST00000197612	Ensembl | MGI Sequence Detail	2071	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;