Gm43244 Gene Detail

Summary

• Symbol
  Gm43244
• Name
  predicted gene 43244

• Feature Type
  lncRNA gene
• IDs
  MGI:5663381
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:102037254-102038538 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663381	lncRNA gene	Chr3:102037254-102038538 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036967	sense intronic lncRNA gene	Chr3:103354305-103355593 (+)
A/J	MGP_AJ_G0036955	sense intronic lncRNA gene	Chr3:100057179-100058494 (+)
AKR/J	MGP_AKRJ_G0036902	sense intronic lncRNA gene	Chr3:102540985-102542267 (+)
BALB/cJ	MGP_BALBcJ_G0036946	sense intronic lncRNA gene	Chr3:99820364-99821646 (+)
C3H/HeJ	MGP_C3HHeJ_G0036632	sense intronic lncRNA gene	Chr3:102829949-102831236 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037458	sense intronic lncRNA gene	Chr3:107158352-107159636 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034513	sense intronic lncRNA gene	Chr3:96247338-96248592 (+)
CAST/EiJ	MGP_CASTEiJ_G0035821	sense intronic lncRNA gene	Chr3:101951607-101952886 (+)
CBA/J	MGP_CBAJ_G0036607	sense intronic lncRNA gene	Chr3:110838197-110841673 (+)
DBA/2J	MGP_DBA2J_G0036782	sense intronic lncRNA gene	Chr3:99305261-99306545 (+)
FVB/NJ	MGP_FVBNJ_G0036732	sense intronic lncRNA gene	Chr3:97242743-97244031 (+)
LP/J	MGP_LPJ_G0036830	sense intronic lncRNA gene	Chr3:104697356-104699750 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036740	sense intronic lncRNA gene	Chr3:116975655-116976935 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037576	sense intronic lncRNA gene	Chr3:102040251-102041531 (+)
PWK/PhJ	MGP_PWKPhJ_G0035514	sense intronic lncRNA gene	Chr3:99068256-99069536 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035326	sense intronic lncRNA gene	Chr3:100127888-100129217 (+)
WSB/EiJ	MGP_WSBEiJ_G0036021	sense intronic lncRNA gene	Chr3:102595763-102597042 (+)

Homology

• Gene Tree
  Gm43244
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105342 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105342	Ensembl Gene Model | MGI Sequence Detail	1285	C57BL/6J
transcript	ENSMUST00000196994	Ensembl | MGI Sequence Detail	1285	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;