Gm43259 Gene Detail

Summary

• Symbol
  Gm43259
• Name
  predicted gene 43259

• Feature Type
  lncRNA gene
• IDs
  MGI:5663396
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104071240-104074516 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663396	lncRNA gene	Chr3:104071240-104074516 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036984	sense intronic lncRNA gene	Chr3:105461970-105465246 (-)
A/J	MGP_AJ_G0036973	sense intronic lncRNA gene	Chr3:102108009-102111285 (-)
AKR/J	MGP_AKRJ_G0036920	sense intronic lncRNA gene	Chr3:104603803-104607079 (-)
BALB/cJ	MGP_BALBcJ_G0036963	sense intronic lncRNA gene	Chr3:101881811-101885088 (-)
C3H/HeJ	MGP_C3HHeJ_G0036650	sense intronic lncRNA gene	Chr3:104983045-104986321 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037476	sense intronic lncRNA gene	Chr3:109380661-109383937 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034528	sense intronic lncRNA gene	Chr3:98239674-98242929 (-)
CAST/EiJ	MGP_CASTEiJ_G0035838	sense intronic lncRNA gene	Chr3:104093406-104096681 (-)
CBA/J	MGP_CBAJ_G0036625	sense intronic lncRNA gene	Chr3:113119696-113122972 (-)
DBA/2J	MGP_DBA2J_G0036800	sense intronic lncRNA gene	Chr3:101357238-101360514 (-)
FVB/NJ	MGP_FVBNJ_G0036750	sense intronic lncRNA gene	Chr3:99287086-99290362 (-)
LP/J	MGP_LPJ_G0036847	sense intronic lncRNA gene	Chr3:106812517-106815793 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036758	sense intronic lncRNA gene	Chr3:119259494-119262771 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037594	sense intronic lncRNA gene	Chr3:104162537-104165814 (-)
PWK/PhJ	MGP_PWKPhJ_G0035530	sense intronic lncRNA gene	Chr3:101137149-101140425 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035339	sense intronic lncRNA gene	Chr3:102217962-102221231 (-)
WSB/EiJ	MGP_WSBEiJ_G0036038	sense intronic lncRNA gene	Chr3:104728359-104731635 (-)

Homology

• Gene Tree
  Gm43259
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106432 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106432	Ensembl Gene Model | MGI Sequence Detail	3277	C57BL/6J
transcript	ENSMUST00000198446	Ensembl | MGI Sequence Detail	3277	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;